Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC17.47■□□□□ 0.39
SCN4AP35499 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC17.47■□□□□ 0.39
SCN4AP35499 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC17.47■□□□□ 0.39
SCN4AP35499 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC17.47■□□□□ 0.39
SCN4AP35499 SIGLEC22P-201ENST00000599104 714 ntBASIC17.47■□□□□ 0.39
SCN4AP35499 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SCN4AP35499 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SCN4AP35499 NKILA-202ENST00000614771 2598 ntBASIC17.47■□□□□ 0.39
SCN4AP35499 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SCN4AP35499 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SCN4AP35499 AL109809.1-201ENST00000418979 1367 ntBASIC17.47■□□□□ 0.39
SCN4AP35499 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SCN4AP35499 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.47■□□□□ 0.39
SCN4AP35499 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SCN4AP35499 AC021305.1-201ENST00000520656 1514 ntBASIC17.47■□□□□ 0.39
SCN4AP35499 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SCN4AP35499 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SCN4AP35499 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SCN4AP35499 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SCN4AP35499 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SCN4AP35499 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC17.47■□□□□ 0.39
SCN4AP35499 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SCN4AP35499 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
SCN4AP35499 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SCN4AP35499 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC17.47■□□□□ 0.39
SCN4AP35499 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.47■□□□□ 0.39
SCN4AP35499 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SCN4AP35499 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SCN4AP35499 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC17.47■□□□□ 0.39
SCN4AP35499 HNRNPA1P27-201ENST00000412087 955 ntBASIC17.47■□□□□ 0.39
SCN4AP35499 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SCN4AP35499 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SCN4AP35499 IGHEP1-201ENST00000521393 651 ntBASIC17.47■□□□□ 0.39
SCN4AP35499 OR5BD1P-201ENST00000532527 817 ntBASIC17.47■□□□□ 0.39
SCN4AP35499 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC17.47■□□□□ 0.39
SCN4AP35499 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC17.47■□□□□ 0.39
SCN4AP35499 MIR5001-201ENST00000580185 100 ntBASIC17.47■□□□□ 0.39
SCN4AP35499 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC17.47■□□□□ 0.39
SCN4AP35499 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC17.47■□□□□ 0.39
SCN4AP35499 AL136172.1-201ENST00000598590 1394 ntBASIC17.47■□□□□ 0.39
SCN4AP35499 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SCN4AP35499 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
SCN4AP35499 AC023090.2-201ENST00000625182 2110 ntBASIC17.46■□□□□ 0.39
SCN4AP35499 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SCN4AP35499 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
SCN4AP35499 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
SCN4AP35499 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SCN4AP35499 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC17.46■□□□□ 0.39
SCN4AP35499 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
SCN4AP35499 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SCN4AP35499 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC17.46■□□□□ 0.39
SCN4AP35499 AL929302.1-201ENST00000426556 871 ntBASIC17.46■□□□□ 0.39
SCN4AP35499 AL451000.1-201ENST00000451300 1186 ntBASIC17.46■□□□□ 0.39
SCN4AP35499 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SCN4AP35499 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC17.46■□□□□ 0.39
SCN4AP35499 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC17.46■□□□□ 0.39
SCN4AP35499 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC17.46■□□□□ 0.39
SCN4AP35499 OR2A1-AS1-210ENST00000496968 531 ntBASIC17.46■□□□□ 0.39
SCN4AP35499 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC17.46■□□□□ 0.39
SCN4AP35499 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SCN4AP35499 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
SCN4AP35499 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.46■□□□□ 0.39
SCN4AP35499 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC17.46■□□□□ 0.39
SCN4AP35499 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SCN4AP35499 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SCN4AP35499 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SCN4AP35499 AC007292.2-201ENST00000593524 1812 ntBASIC17.46■□□□□ 0.39
SCN4AP35499 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC17.46■□□□□ 0.39
SCN4AP35499 AL118508.1-201ENST00000613502 2345 ntBASIC17.46■□□□□ 0.39
SCN4AP35499 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC17.46■□□□□ 0.39
SCN4AP35499 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
SCN4AP35499 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC17.45■□□□□ 0.38
SCN4AP35499 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SCN4AP35499 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SCN4AP35499 REXO1L2P-201ENST00000425429 2069 ntBASIC17.45■□□□□ 0.38
SCN4AP35499 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SCN4AP35499 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC17.45■□□□□ 0.38
SCN4AP35499 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC17.45■□□□□ 0.38
SCN4AP35499 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC17.45■□□□□ 0.38
SCN4AP35499 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SCN4AP35499 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SCN4AP35499 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SCN4AP35499 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
SCN4AP35499 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SCN4AP35499 NME2-201ENST00000393183 568 ntTSL 2 BASIC17.45■□□□□ 0.38
SCN4AP35499 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC17.45■□□□□ 0.38
SCN4AP35499 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC17.45■□□□□ 0.38
SCN4AP35499 RN7SL530P-201ENST00000485097 298 ntBASIC17.45■□□□□ 0.38
SCN4AP35499 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SCN4AP35499 AC226150.1-201ENST00000544259 466 ntBASIC17.45■□□□□ 0.38
SCN4AP35499 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
SCN4AP35499 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC17.45■□□□□ 0.38
SCN4AP35499 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SCN4AP35499 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SCN4AP35499 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.45■□□□□ 0.38
SCN4AP35499 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SCN4AP35499 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SCN4AP35499 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC17.45■□□□□ 0.38
SCN4AP35499 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SCN4AP35499 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms