Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.7
RXRBP28702 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RXRBP28702 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RXRBP28702 MST1L-201ENST00000442552 2185 ntBASIC19.39■□□□□ 0.69
RXRBP28702 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
RXRBP28702 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC19.39■□□□□ 0.69
RXRBP28702 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
RXRBP28702 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RXRBP28702 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RXRBP28702 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
RXRBP28702 AP000354.1-201ENST00000396982 456 ntBASIC19.39■□□□□ 0.69
RXRBP28702 PEBP1P3-201ENST00000455475 548 ntBASIC19.39■□□□□ 0.69
RXRBP28702 AP000920.1-201ENST00000531824 344 ntBASIC19.39■□□□□ 0.69
RXRBP28702 FOXN3-AS2-201ENST00000554071 1262 ntBASIC19.39■□□□□ 0.69
RXRBP28702 SRP14-208ENST00000560773 468 ntTSL 3 BASIC19.39■□□□□ 0.69
RXRBP28702 INO80E-209ENST00000567254 625 ntTSL 2 BASIC19.39■□□□□ 0.69
RXRBP28702 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RXRBP28702 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RXRBP28702 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RXRBP28702 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RXRBP28702 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RXRBP28702 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RXRBP28702 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RXRBP28702 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RXRBP28702 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RXRBP28702 AL137783.1-201ENST00000623494 1896 ntBASIC19.39■□□□□ 0.69
RXRBP28702 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RXRBP28702 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RXRBP28702 AC007613.1-201ENST00000572811 2597 ntBASIC19.39■□□□□ 0.69
RXRBP28702 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
RXRBP28702 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RXRBP28702 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RXRBP28702 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RXRBP28702 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RXRBP28702 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
RXRBP28702 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RXRBP28702 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RXRBP28702 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
RXRBP28702 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RXRBP28702 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RXRBP28702 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC19.38■□□□□ 0.69
RXRBP28702 PIFO-201ENST00000369737 746 ntTSL 2 BASIC19.38■□□□□ 0.69
RXRBP28702 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC19.38■□□□□ 0.69
RXRBP28702 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RXRBP28702 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC19.38■□□□□ 0.69
RXRBP28702 AL157823.1-201ENST00000403727 628 ntBASIC19.38■□□□□ 0.69
RXRBP28702 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
RXRBP28702 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RXRBP28702 AL357833.1-201ENST00000413993 832 ntTSL 3 BASIC19.38■□□□□ 0.69
RXRBP28702 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
RXRBP28702 KCNK15-AS1-202ENST00000427303 528 ntTSL 5 BASIC19.38■□□□□ 0.69
RXRBP28702 CDCA4P4-201ENST00000435216 680 ntBASIC19.38■□□□□ 0.69
RXRBP28702 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC19.38■□□□□ 0.69
RXRBP28702 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC19.38■□□□□ 0.69
RXRBP28702 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RXRBP28702 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RXRBP28702 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RXRBP28702 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RXRBP28702 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC19.38■□□□□ 0.69
RXRBP28702 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC19.38■□□□□ 0.69
RXRBP28702 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC19.38■□□□□ 0.69
RXRBP28702 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RXRBP28702 MT2A-202ENST00000561491 581 ntTSL 2 BASIC19.38■□□□□ 0.69
RXRBP28702 AC009093.2-201ENST00000563477 546 ntTSL 4 BASIC19.38■□□□□ 0.69
RXRBP28702 RN7SL665P-201ENST00000578793 300 ntBASIC19.38■□□□□ 0.69
RXRBP28702 MIR4640-201ENST00000581824 90 ntBASIC19.38■□□□□ 0.69
RXRBP28702 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RXRBP28702 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC19.38■□□□□ 0.69
RXRBP28702 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC19.38■□□□□ 0.69
RXRBP28702 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RXRBP28702 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
RXRBP28702 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.38■□□□□ 0.69
RXRBP28702 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
RXRBP28702 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
RXRBP28702 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RXRBP28702 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC19.37■□□□□ 0.69
RXRBP28702 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RXRBP28702 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RXRBP28702 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC19.37■□□□□ 0.69
RXRBP28702 FAS-202ENST00000352159 1722 ntTSL 5 BASIC19.37■□□□□ 0.69
RXRBP28702 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RXRBP28702 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RXRBP28702 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RXRBP28702 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RXRBP28702 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RXRBP28702 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
RXRBP28702 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RXRBP28702 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RXRBP28702 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
RXRBP28702 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RXRBP28702 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RXRBP28702 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RXRBP28702 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
RXRBP28702 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
RXRBP28702 MIR645-201ENST00000385283 94 ntBASIC19.37■□□□□ 0.69
RXRBP28702 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC19.37■□□□□ 0.69
RXRBP28702 AC104961.1-201ENST00000427605 771 ntBASIC19.37■□□□□ 0.69
RXRBP28702 AL512599.1-201ENST00000430724 685 ntBASIC19.37■□□□□ 0.69
RXRBP28702 ASS1P2-201ENST00000439895 1223 ntBASIC19.37■□□□□ 0.69
RXRBP28702 OR2R1P-201ENST00000441404 914 ntBASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms