Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SDC1P18827 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDC1P18827 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDC1P18827 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDC1P18827 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SDC1P18827 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDC1P18827 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDC1P18827 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDC1P18827 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDC1P18827 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDC1P18827 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
SDC1P18827 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDC1P18827 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.53□□□□□ -0.08
SDC1P18827 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDC1P18827 AP001267.2-201ENST00000532619 2086 ntBASIC14.53□□□□□ -0.08
SDC1P18827 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDC1P18827 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.53□□□□□ -0.08
SDC1P18827 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDC1P18827 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDC1P18827 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.53□□□□□ -0.08
SDC1P18827 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.53□□□□□ -0.08
SDC1P18827 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDC1P18827 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
SDC1P18827 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SDC1P18827 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDC1P18827 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.53□□□□□ -0.08
SDC1P18827 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDC1P18827 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDC1P18827 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.53□□□□□ -0.08
SDC1P18827 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDC1P18827 PON3-203ENST00000427422 894 ntTSL 3 BASIC14.53□□□□□ -0.08
SDC1P18827 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC14.53□□□□□ -0.08
SDC1P18827 AL353779.1-201ENST00000434793 351 ntBASIC14.53□□□□□ -0.08
SDC1P18827 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC14.53□□□□□ -0.08
SDC1P18827 RHOA-206ENST00000454011 889 ntTSL 2 BASIC14.53□□□□□ -0.08
SDC1P18827 FAM86LP-201ENST00000478302 853 ntBASIC14.53□□□□□ -0.08
SDC1P18827 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC14.53□□□□□ -0.08
SDC1P18827 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDC1P18827 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.53□□□□□ -0.08
SDC1P18827 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDC1P18827 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.53□□□□□ -0.08
SDC1P18827 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC14.53□□□□□ -0.08
SDC1P18827 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC14.53□□□□□ -0.08
SDC1P18827 AC036164.1-201ENST00000570544 333 ntBASIC14.53□□□□□ -0.08
SDC1P18827 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.53□□□□□ -0.08
SDC1P18827 AC139530.3-201ENST00000620344 690 ntBASIC14.53□□□□□ -0.08
SDC1P18827 AC015656.1-201ENST00000624209 3578 ntBASIC14.53□□□□□ -0.08
SDC1P18827 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDC1P18827 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDC1P18827 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDC1P18827 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14.53□□□□□ -0.08
SDC1P18827 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDC1P18827 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
SDC1P18827 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDC1P18827 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SDC1P18827 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.52□□□□□ -0.08
SDC1P18827 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SDC1P18827 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
SDC1P18827 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.52□□□□□ -0.08
SDC1P18827 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC14.52□□□□□ -0.08
SDC1P18827 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.08
SDC1P18827 AL158070.2-201ENST00000623713 1621 ntBASIC14.52□□□□□ -0.08
SDC1P18827 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SDC1P18827 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SDC1P18827 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.52□□□□□ -0.08
SDC1P18827 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
SDC1P18827 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
SDC1P18827 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
SDC1P18827 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.52□□□□□ -0.08
SDC1P18827 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SDC1P18827 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SDC1P18827 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
SDC1P18827 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SDC1P18827 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
SDC1P18827 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SDC1P18827 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SDC1P18827 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SDC1P18827 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC14.52□□□□□ -0.09
SDC1P18827 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.52□□□□□ -0.09
SDC1P18827 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.52□□□□□ -0.09
SDC1P18827 AC026410.3-201ENST00000514280 936 ntBASIC14.52□□□□□ -0.09
SDC1P18827 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.52□□□□□ -0.09
SDC1P18827 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.52□□□□□ -0.09
SDC1P18827 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.52□□□□□ -0.09
SDC1P18827 RARRES2P5-201ENST00000564013 466 ntBASIC14.52□□□□□ -0.09
SDC1P18827 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.52□□□□□ -0.09
SDC1P18827 AL049840.4-201ENST00000602422 811 ntBASIC14.52□□□□□ -0.09
SDC1P18827 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.52□□□□□ -0.09
SDC1P18827 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.52□□□□□ -0.09
SDC1P18827 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
SDC1P18827 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SDC1P18827 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.52□□□□□ -0.09
SDC1P18827 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC14.52□□□□□ -0.09
SDC1P18827 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC14.52□□□□□ -0.09
SDC1P18827 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SDC1P18827 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SDC1P18827 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SDC1P18827 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.52□□□□□ -0.09
SDC1P18827 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SDC1P18827 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms