Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
TPM1P09493 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC16.89■□□□□ 0.29
TPM1P09493 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TPM1P09493 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC16.89■□□□□ 0.29
TPM1P09493 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.89■□□□□ 0.29
TPM1P09493 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TPM1P09493 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
TPM1P09493 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TPM1P09493 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
TPM1P09493 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TPM1P09493 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TPM1P09493 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC16.89■□□□□ 0.29
TPM1P09493 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
TPM1P09493 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TPM1P09493 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
TPM1P09493 AL122018.1-201ENST00000446607 2310 ntBASIC16.89■□□□□ 0.29
TPM1P09493 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TPM1P09493 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
TPM1P09493 AL592309.1-201ENST00000443127 649 ntBASIC16.89■□□□□ 0.29
TPM1P09493 ACTG1P14-201ENST00000446382 1122 ntBASIC16.89■□□□□ 0.29
TPM1P09493 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TPM1P09493 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TPM1P09493 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC16.89■□□□□ 0.29
TPM1P09493 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.89■□□□□ 0.29
TPM1P09493 AC140113.2-201ENST00000604370 208 ntBASIC16.89■□□□□ 0.29
TPM1P09493 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.89■□□□□ 0.29
TPM1P09493 SERF2-217ENST00000630046 862 ntTSL 5 BASIC16.89■□□□□ 0.29
TPM1P09493 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
TPM1P09493 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TPM1P09493 BX640514.1-201ENST00000583223 1918 ntBASIC16.89■□□□□ 0.29
TPM1P09493 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TPM1P09493 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TPM1P09493 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TPM1P09493 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TPM1P09493 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
TPM1P09493 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.89■□□□□ 0.29
TPM1P09493 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TPM1P09493 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TPM1P09493 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC16.89■□□□□ 0.29
TPM1P09493 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC16.89■□□□□ 0.29
TPM1P09493 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
TPM1P09493 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
TPM1P09493 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TPM1P09493 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
TPM1P09493 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TPM1P09493 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TPM1P09493 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.88■□□□□ 0.29
TPM1P09493 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TPM1P09493 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.88■□□□□ 0.29
TPM1P09493 TKT-201ENST00000296289 1931 ntTSL 5 BASIC16.88■□□□□ 0.29
TPM1P09493 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
TPM1P09493 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC16.88■□□□□ 0.29
TPM1P09493 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
TPM1P09493 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC16.88■□□□□ 0.29
TPM1P09493 AL359881.3-201ENST00000602640 1721 ntBASIC16.88■□□□□ 0.29
TPM1P09493 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
TPM1P09493 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TPM1P09493 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TPM1P09493 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.88■□□□□ 0.29
TPM1P09493 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TPM1P09493 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TPM1P09493 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.88■□□□□ 0.29
TPM1P09493 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
TPM1P09493 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.88■□□□□ 0.29
TPM1P09493 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.88■□□□□ 0.29
TPM1P09493 AC105021.1-202ENST00000570572 669 ntBASIC16.88■□□□□ 0.29
TPM1P09493 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
TPM1P09493 AC084121.4-201ENST00000641598 221 ntBASIC16.88■□□□□ 0.29
TPM1P09493 AF228730.8-201ENST00000642140 221 ntBASIC16.88■□□□□ 0.29
TPM1P09493 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TPM1P09493 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC16.88■□□□□ 0.29
TPM1P09493 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC16.88■□□□□ 0.29
TPM1P09493 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TPM1P09493 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TPM1P09493 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TPM1P09493 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC16.88■□□□□ 0.29
TPM1P09493 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TPM1P09493 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TPM1P09493 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
TPM1P09493 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TPM1P09493 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TPM1P09493 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
TPM1P09493 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
TPM1P09493 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TPM1P09493 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC16.87■□□□□ 0.29
TPM1P09493 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
TPM1P09493 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TPM1P09493 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TPM1P09493 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TPM1P09493 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC16.87■□□□□ 0.29
TPM1P09493 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.87■□□□□ 0.29
TPM1P09493 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC16.87■□□□□ 0.29
TPM1P09493 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
TPM1P09493 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TPM1P09493 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TPM1P09493 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
TPM1P09493 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
TPM1P09493 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TPM1P09493 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.87■□□□□ 0.29
TPM1P09493 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms