Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AL512384.1-201ENST00000406683 331 ntBASIC15.03■□□□□ -0
VPS4BO75351 MIR1909-201ENST00000411312 80 ntBASIC15.03■□□□□ -0
VPS4BO75351 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC15.03■□□□□ -0
VPS4BO75351 TMPRSS11CP-201ENST00000453277 683 ntBASIC15.03■□□□□ -0
VPS4BO75351 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC15.03■□□□□ -0
VPS4BO75351 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC15.03■□□□□ -0
VPS4BO75351 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
VPS4BO75351 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.03■□□□□ -0
VPS4BO75351 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.03■□□□□ -0
VPS4BO75351 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.03■□□□□ -0
VPS4BO75351 NAA38-206ENST00000576384 424 ntTSL 2 BASIC15.03■□□□□ -0
VPS4BO75351 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC15.03■□□□□ -0
VPS4BO75351 PRR29-204ENST00000577953 565 ntTSL 4 BASIC15.03■□□□□ -0
VPS4BO75351 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC15.03■□□□□ -0
VPS4BO75351 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS4BO75351 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS4BO75351 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.03■□□□□ -0
VPS4BO75351 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS4BO75351 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS4BO75351 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC15.03■□□□□ -0
VPS4BO75351 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS4BO75351 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
VPS4BO75351 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
VPS4BO75351 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.03■□□□□ -0
VPS4BO75351 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS4BO75351 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC15.03■□□□□ -0
VPS4BO75351 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.03■□□□□ -0
VPS4BO75351 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.03■□□□□ -0
VPS4BO75351 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VPS4BO75351 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.02■□□□□ -0
VPS4BO75351 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
VPS4BO75351 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC15.02■□□□□ -0
VPS4BO75351 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VPS4BO75351 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
VPS4BO75351 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.02■□□□□ -0
VPS4BO75351 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
VPS4BO75351 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC15.02■□□□□ -0
VPS4BO75351 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VPS4BO75351 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VPS4BO75351 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
VPS4BO75351 AC087499.5-201ENST00000452760 1342 ntBASIC15.02■□□□□ -0
VPS4BO75351 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VPS4BO75351 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VPS4BO75351 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VPS4BO75351 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VPS4BO75351 RPS19-201ENST00000221975 500 ntTSL 3 BASIC15.02■□□□□ -0
VPS4BO75351 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.02■□□□□ -0
VPS4BO75351 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.02■□□□□ -0
VPS4BO75351 HIST3H2BA-201ENST00000436555 524 ntBASIC15.02■□□□□ -0
VPS4BO75351 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.02■□□□□ -0
VPS4BO75351 ACA64.2-201ENST00000459014 129 ntBASIC15.02■□□□□ -0
VPS4BO75351 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC15.02■□□□□ -0
VPS4BO75351 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC15.02■□□□□ -0
VPS4BO75351 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC15.02■□□□□ -0
VPS4BO75351 API5-211ENST00000534695 560 ntTSL 5 BASIC15.02■□□□□ -0
VPS4BO75351 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.02■□□□□ -0
VPS4BO75351 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC15.02■□□□□ -0
VPS4BO75351 POLE2-203ENST00000553805 496 ntTSL 2 BASIC15.02■□□□□ -0
VPS4BO75351 RAB43P1-201ENST00000561790 589 ntBASIC15.02■□□□□ -0
VPS4BO75351 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
VPS4BO75351 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.02■□□□□ -0
VPS4BO75351 AL645728.2-202ENST00000641679 227 ntBASIC15.02■□□□□ -0
VPS4BO75351 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS4BO75351 CICP14-201ENST00000629111 2732 ntBASIC15.02□□□□□ -0.01
VPS4BO75351 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
VPS4BO75351 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS4BO75351 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS4BO75351 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS4BO75351 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS4BO75351 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
VPS4BO75351 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS4BO75351 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.02□□□□□ -0.01
VPS4BO75351 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.02□□□□□ -0.01
VPS4BO75351 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
VPS4BO75351 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS4BO75351 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS4BO75351 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC15.02□□□□□ -0.01
VPS4BO75351 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS4BO75351 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.02□□□□□ -0.01
VPS4BO75351 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
VPS4BO75351 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS4BO75351 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.01□□□□□ -0.01
VPS4BO75351 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
VPS4BO75351 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4BO75351 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4BO75351 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4BO75351 CETN4P-206ENST00000642099 2168 ntBASIC15.01□□□□□ -0.01
VPS4BO75351 AL391825.1-201ENST00000457671 1364 ntBASIC15.01□□□□□ -0.01
VPS4BO75351 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4BO75351 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
VPS4BO75351 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.01□□□□□ -0.01
VPS4BO75351 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4BO75351 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.01□□□□□ -0.01
VPS4BO75351 AC005912.2-201ENST00000619492 2400 ntBASIC15.01□□□□□ -0.01
VPS4BO75351 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4BO75351 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4BO75351 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4BO75351 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4BO75351 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC15.01□□□□□ -0.01
VPS4BO75351 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms