Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
MSH5O43196 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
MSH5O43196 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC21.6■■□□□ 1.05
MSH5O43196 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH5O43196 AMT-250ENST00000637682 1823 ntTSL 5 BASIC21.59■■□□□ 1.05
MSH5O43196 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH5O43196 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
MSH5O43196 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH5O43196 SDAD1P4-201ENST00000418445 1645 ntBASIC21.59■■□□□ 1.05
MSH5O43196 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC21.59■■□□□ 1.05
MSH5O43196 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH5O43196 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
MSH5O43196 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC21.59■■□□□ 1.05
MSH5O43196 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH5O43196 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC21.59■■□□□ 1.05
MSH5O43196 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH5O43196 WASH6P-202ENST00000359512 1437 ntBASIC21.59■■□□□ 1.05
MSH5O43196 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
MSH5O43196 PGF-202ENST00000405431 666 ntTSL 5 BASIC21.59■■□□□ 1.05
MSH5O43196 AL356320.2-201ENST00000417263 507 ntBASIC21.59■■□□□ 1.05
MSH5O43196 RGS5-215ENST00000439699 1441 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
MSH5O43196 MTATP6P23-201ENST00000440153 476 ntBASIC21.59■■□□□ 1.05
MSH5O43196 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC21.59■■□□□ 1.05
MSH5O43196 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC21.59■■□□□ 1.05
MSH5O43196 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH5O43196 NFU1-207ENST00000462320 558 ntTSL 4 BASIC21.59■■□□□ 1.05
MSH5O43196 RPS7P10-201ENST00000464254 603 ntBASIC21.59■■□□□ 1.05
MSH5O43196 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC21.59■■□□□ 1.05
MSH5O43196 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC21.59■■□□□ 1.05
MSH5O43196 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC21.59■■□□□ 1.05
MSH5O43196 AC003101.2-201ENST00000612557 442 ntBASIC21.59■■□□□ 1.05
MSH5O43196 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC21.59■■□□□ 1.05
MSH5O43196 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH5O43196 LINC02006-202ENST00000492569 1958 ntTSL 2 BASIC21.59■■□□□ 1.05
MSH5O43196 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH5O43196 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
MSH5O43196 AC011525.2-202ENST00000590611 1657 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
MSH5O43196 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH5O43196 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH5O43196 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
MSH5O43196 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
MSH5O43196 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC21.59■■□□□ 1.05
MSH5O43196 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC21.59■■□□□ 1.05
MSH5O43196 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC21.58■■□□□ 1.05
MSH5O43196 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC21.58■■□□□ 1.05
MSH5O43196 AL512310.2-201ENST00000547175 1493 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
MSH5O43196 LINC02297-201ENST00000548050 1493 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
MSH5O43196 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH5O43196 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH5O43196 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH5O43196 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
MSH5O43196 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH5O43196 AL356473.1-201ENST00000406203 1408 ntBASIC21.58■■□□□ 1.05
MSH5O43196 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC21.58■■□□□ 1.05
MSH5O43196 FRG1-201ENST00000226798 1074 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH5O43196 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
MSH5O43196 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC21.58■■□□□ 1.05
MSH5O43196 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH5O43196 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH5O43196 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
MSH5O43196 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
MSH5O43196 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC21.58■■□□□ 1.05
MSH5O43196 AC073188.3-201ENST00000425228 339 ntTSL 2 BASIC21.58■■□□□ 1.05
MSH5O43196 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC21.58■■□□□ 1.05
MSH5O43196 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
MSH5O43196 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC21.58■■□□□ 1.05
MSH5O43196 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH5O43196 SPTLC1P1-201ENST00000447199 261 ntBASIC21.58■■□□□ 1.05
MSH5O43196 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
MSH5O43196 TMEM161B-207ENST00000509387 963 ntTSL 2 BASIC21.58■■□□□ 1.05
MSH5O43196 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
MSH5O43196 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC21.58■■□□□ 1.05
MSH5O43196 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC21.58■■□□□ 1.05
MSH5O43196 FOXN3-AS2-201ENST00000554071 1262 ntBASIC21.58■■□□□ 1.05
MSH5O43196 COQ4-205ENST00000609948 956 ntTSL 2 BASIC21.58■■□□□ 1.05
MSH5O43196 AC011447.5-201ENST00000616168 564 ntBASIC21.58■■□□□ 1.05
MSH5O43196 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH5O43196 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC21.58■■□□□ 1.05
MSH5O43196 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC21.58■■□□□ 1.04
MSH5O43196 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC21.58■■□□□ 1.04
MSH5O43196 RGN-201ENST00000336169 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
MSH5O43196 AC005736.1-201ENST00000576810 1394 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
MSH5O43196 AC007342.9-201ENST00000623877 1385 ntBASIC21.58■■□□□ 1.04
MSH5O43196 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
MSH5O43196 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
MSH5O43196 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
MSH5O43196 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
MSH5O43196 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
MSH5O43196 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.04
MSH5O43196 AC138035.3-201ENST00000622706 2791 ntBASIC21.58■■□□□ 1.04
MSH5O43196 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH5O43196 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH5O43196 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH5O43196 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH5O43196 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH5O43196 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH5O43196 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH5O43196 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
MSH5O43196 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH5O43196 LINC02525-202ENST00000435043 1505 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms