Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 AL080243.2-201ENST00000418783 582 ntBASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 FAM8A3P-201ENST00000427218 844 ntBASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 HLA-V-204ENST00000476601 1289 ntBASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 FO538757.1-201ENST00000623083 1397 ntBASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC39Q9UFE4 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 STRN-202ENST00000379213 2254 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 RPL37AP1-201ENST00000412502 279 ntBASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 AC126335.2-201ENST00000623362 4637 ntBASIC17.75■□□□□ 0.43
CCDC39Q9UFE4 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 PTENP1-202ENST00000532280 3996 ntBASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 TARDBPP1-201ENST00000442013 1203 ntBASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 AC125807.1-201ENST00000483097 614 ntBASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 AC067863.1-201ENST00000494933 530 ntBASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms