Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 AC126177.1-201ENST00000547829 2218 ntBASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 AC112693.3-201ENST00000624819 1983 ntBASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 CICP11-201ENST00000434745 2827 ntBASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 AC013268.4-201ENST00000637413 2228 ntBASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 MGST3-203ENST00000367885 680 ntTSL 2 BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 BAATP1-201ENST00000412284 1225 ntBASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 SLC25A47P1-201ENST00000531577 414 ntBASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 AC106886.1-201ENST00000568660 600 ntBASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 AC008735.3-201ENST00000596646 500 ntBASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 C18orf15-201ENST00000623680 2534 ntBASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRIM39Q9HCM9 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 AC114812.1-204ENST00000449669 728 ntBASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 NAA50-208ENST00000497255 789 ntTSL 5 BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 AC022137.2-201ENST00000503482 481 ntBASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 AC068587.3-201ENST00000526613 355 ntBASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 APOC4-201ENST00000591600 348 ntTSL 3 BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 BTNL10-201ENST00000595971 695 ntBASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 PRSS30P-206ENST00000641773 873 ntBASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 AC104581.4-201ENST00000623126 3052 ntBASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms