Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 FAM197Y7-201ENST00000432892 766 ntBASIC18.45■□□□□ 0.54
RPAP1Q9BWH6 C2orf69P2-201ENST00000562032 1123 ntBASIC18.45■□□□□ 0.54
RPAP1Q9BWH6 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
RPAP1Q9BWH6 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
RPAP1Q9BWH6 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RPAP1Q9BWH6 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC18.45■□□□□ 0.54
RPAP1Q9BWH6 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RPAP1Q9BWH6 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC18.45■□□□□ 0.54
RPAP1Q9BWH6 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RPAP1Q9BWH6 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RPAP1Q9BWH6 AL138799.1-201ENST00000448213 1675 ntBASIC18.45■□□□□ 0.54
RPAP1Q9BWH6 GPI-205ENST00000586425 1799 ntTSL 5 BASIC18.45■□□□□ 0.54
RPAP1Q9BWH6 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
RPAP1Q9BWH6 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC18.45■□□□□ 0.54
RPAP1Q9BWH6 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RPAP1Q9BWH6 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RPAP1Q9BWH6 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC18.45■□□□□ 0.54
RPAP1Q9BWH6 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
RPAP1Q9BWH6 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RPAP1Q9BWH6 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 AL645937.2-201ENST00000396808 931 ntBASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 KRT8P35-201ENST00000483942 1338 ntBASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 ZBED1P1-201ENST00000502364 1930 ntBASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 AC078819.1-201ENST00000547454 765 ntBASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 AC012085.1-201ENST00000548270 765 ntBASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RPAP1Q9BWH6 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 COCH-203ENST00000460581 2688 ntTSL 2 BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 AC004066.1-201ENST00000502488 802 ntBASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
RPAP1Q9BWH6 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms