Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AL391825.1-201ENST00000457671 1364 ntBASIC13.58□□□□□ -0.23
SKA3Q8IX90 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
SKA3Q8IX90 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
SKA3Q8IX90 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC13.58□□□□□ -0.23
SKA3Q8IX90 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.23
SKA3Q8IX90 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC13.58□□□□□ -0.24
SKA3Q8IX90 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
SKA3Q8IX90 AC023024.2-201ENST00000623561 1993 ntBASIC13.58□□□□□ -0.24
SKA3Q8IX90 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
SKA3Q8IX90 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC13.58□□□□□ -0.24
SKA3Q8IX90 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC13.58□□□□□ -0.24
SKA3Q8IX90 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SKA3Q8IX90 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC13.58□□□□□ -0.24
SKA3Q8IX90 AC087499.6-201ENST00000411576 835 ntBASIC13.58□□□□□ -0.24
SKA3Q8IX90 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC13.58□□□□□ -0.24
SKA3Q8IX90 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SKA3Q8IX90 TERF1P3-201ENST00000505638 1227 ntBASIC13.58□□□□□ -0.24
SKA3Q8IX90 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC13.58□□□□□ -0.24
SKA3Q8IX90 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC13.58□□□□□ -0.24
SKA3Q8IX90 CDK4-206ENST00000549606 558 ntTSL 2 BASIC13.58□□□□□ -0.24
SKA3Q8IX90 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC13.58□□□□□ -0.24
SKA3Q8IX90 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC13.58□□□□□ -0.24
SKA3Q8IX90 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SKA3Q8IX90 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC13.58□□□□□ -0.24
SKA3Q8IX90 YTHDF3-AS1-201ENST00000603538 718 ntBASIC13.58□□□□□ -0.24
SKA3Q8IX90 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC13.58□□□□□ -0.24
SKA3Q8IX90 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC13.58□□□□□ -0.24
SKA3Q8IX90 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC13.58□□□□□ -0.24
SKA3Q8IX90 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SKA3Q8IX90 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SKA3Q8IX90 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SKA3Q8IX90 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SKA3Q8IX90 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
SKA3Q8IX90 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SKA3Q8IX90 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC13.58□□□□□ -0.24
SKA3Q8IX90 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
SKA3Q8IX90 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SKA3Q8IX90 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
SKA3Q8IX90 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SKA3Q8IX90 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SKA3Q8IX90 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SKA3Q8IX90 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SKA3Q8IX90 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
SKA3Q8IX90 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
SKA3Q8IX90 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SKA3Q8IX90 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
SKA3Q8IX90 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
SKA3Q8IX90 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SKA3Q8IX90 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SKA3Q8IX90 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SKA3Q8IX90 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 OR2I1P-210ENST00000642037 4691 ntBASIC13.57□□□□□ -0.24
SKA3Q8IX90 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SKA3Q8IX90 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SKA3Q8IX90 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SKA3Q8IX90 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SKA3Q8IX90 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SKA3Q8IX90 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SKA3Q8IX90 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 PIN1P1-201ENST00000412108 996 ntBASIC13.57□□□□□ -0.24
SKA3Q8IX90 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SKA3Q8IX90 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SKA3Q8IX90 AC104596.2-201ENST00000512793 793 ntBASIC13.57□□□□□ -0.24
SKA3Q8IX90 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 API5-211ENST00000534695 560 ntTSL 5 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 AC123567.1-201ENST00000548294 1261 ntBASIC13.57□□□□□ -0.24
SKA3Q8IX90 GREM1-201ENST00000560677 623 ntTSL 4 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SKA3Q8IX90 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SKA3Q8IX90 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SKA3Q8IX90 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SKA3Q8IX90 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SKA3Q8IX90 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 AP002414.2-201ENST00000591780 3365 ntBASIC13.57□□□□□ -0.24
SKA3Q8IX90 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
SKA3Q8IX90 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SKA3Q8IX90 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SKA3Q8IX90 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC13.56□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms