Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC9.11□□□□□ -0.95
HSPG2P98160 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
HSPG2P98160 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC9.1□□□□□ -0.95
HSPG2P98160 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC9.1□□□□□ -0.95
HSPG2P98160 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
HSPG2P98160 RN7SL582P-201ENST00000491078 279 ntBASIC9.1□□□□□ -0.95
HSPG2P98160 ALG1L3P-201ENST00000503331 765 ntBASIC9.1□□□□□ -0.95
HSPG2P98160 IGHEP2-201ENST00000519308 1256 ntBASIC9.1□□□□□ -0.95
HSPG2P98160 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC9.1□□□□□ -0.95
HSPG2P98160 NKAPP1-204ENST00000555168 557 ntTSL 4 BASIC9.1□□□□□ -0.95
HSPG2P98160 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC9.1□□□□□ -0.95
HSPG2P98160 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC9.1□□□□□ -0.95
HSPG2P98160 AP000322.3-201ENST00000608665 388 ntBASIC9.1□□□□□ -0.95
HSPG2P98160 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC9.1□□□□□ -0.95
HSPG2P98160 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC9.1□□□□□ -0.95
HSPG2P98160 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC9.1□□□□□ -0.95
HSPG2P98160 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC9.1□□□□□ -0.95
HSPG2P98160 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC9.1□□□□□ -0.95
HSPG2P98160 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
HSPG2P98160 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC9.1□□□□□ -0.95
HSPG2P98160 AR-207ENST00000612010 3896 ntTSL 5 BASIC9.1□□□□□ -0.95
HSPG2P98160 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
HSPG2P98160 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
HSPG2P98160 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC9.1□□□□□ -0.95
HSPG2P98160 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
HSPG2P98160 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC9.1□□□□□ -0.95
HSPG2P98160 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC9.1□□□□□ -0.95
HSPG2P98160 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC9.1□□□□□ -0.95
HSPG2P98160 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC9.1□□□□□ -0.95
HSPG2P98160 AC097381.2-201ENST00000510640 859 ntTSL 2 BASIC9.1□□□□□ -0.95
HSPG2P98160 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC9.1□□□□□ -0.95
HSPG2P98160 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
HSPG2P98160 AC120498.5-201ENST00000561757 299 ntBASIC9.1□□□□□ -0.95
HSPG2P98160 AC021321.1-201ENST00000607397 1113 ntBASIC9.1□□□□□ -0.95
HSPG2P98160 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
HSPG2P98160 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
HSPG2P98160 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC9.1□□□□□ -0.95
HSPG2P98160 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC9.1□□□□□ -0.95
HSPG2P98160 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC9.1□□□□□ -0.95
HSPG2P98160 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC9.1□□□□□ -0.95
HSPG2P98160 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
HSPG2P98160 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC9.1□□□□□ -0.95
HSPG2P98160 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC9.1□□□□□ -0.95
HSPG2P98160 SNORA57-201ENST00000383870 149 ntBASIC9.1□□□□□ -0.95
HSPG2P98160 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC9.1□□□□□ -0.95
HSPG2P98160 IGHV3-43-201ENST00000434710 434 ntAPPRIS P1 BASIC9.1□□□□□ -0.95
HSPG2P98160 FAM157A-201ENST00000437428 1141 ntTSL 3 BASIC9.1□□□□□ -0.95
HSPG2P98160 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC9.1□□□□□ -0.95
HSPG2P98160 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC9.1□□□□□ -0.95
HSPG2P98160 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC9.1□□□□□ -0.95
HSPG2P98160 LINC01398-202ENST00000634819 1292 ntTSL 5 BASIC9.1□□□□□ -0.95
HSPG2P98160 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC9.1□□□□□ -0.95
HSPG2P98160 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC9.1□□□□□ -0.95
HSPG2P98160 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC9.1□□□□□ -0.95
HSPG2P98160 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
HSPG2P98160 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC9.1□□□□□ -0.95
HSPG2P98160 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC9.1□□□□□ -0.95
HSPG2P98160 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
HSPG2P98160 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
HSPG2P98160 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC9.1□□□□□ -0.95
HSPG2P98160 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
HSPG2P98160 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC9.1□□□□□ -0.95
HSPG2P98160 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC9.1□□□□□ -0.95
HSPG2P98160 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC9.1□□□□□ -0.95
HSPG2P98160 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC9.1□□□□□ -0.95
HSPG2P98160 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC9.1□□□□□ -0.95
HSPG2P98160 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC9.1□□□□□ -0.95
HSPG2P98160 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
HSPG2P98160 GGTLC4P-201ENST00000402176 664 ntBASIC9.1□□□□□ -0.95
HSPG2P98160 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC9.1□□□□□ -0.95
HSPG2P98160 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC9.1□□□□□ -0.95
HSPG2P98160 AC092295.1-201ENST00000446262 434 ntTSL 3 BASIC9.1□□□□□ -0.95
HSPG2P98160 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
HSPG2P98160 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC9.1□□□□□ -0.95
HSPG2P98160 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC9.1□□□□□ -0.95
HSPG2P98160 AC005274.1-201ENST00000623460 802 ntBASIC9.1□□□□□ -0.95
HSPG2P98160 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC9.1□□□□□ -0.95
HSPG2P98160 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC9.09□□□□□ -0.95
HSPG2P98160 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC9.09□□□□□ -0.95
HSPG2P98160 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC9.09□□□□□ -0.95
HSPG2P98160 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC9.09□□□□□ -0.95
HSPG2P98160 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
HSPG2P98160 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
HSPG2P98160 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
HSPG2P98160 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC9.09□□□□□ -0.95
HSPG2P98160 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC9.09□□□□□ -0.95
HSPG2P98160 GYG2-201ENST00000353656 1293 ntAPPRIS ALT2 TSL 5 BASIC9.09□□□□□ -0.95
HSPG2P98160 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
HSPG2P98160 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
HSPG2P98160 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC9.09□□□□□ -0.95
HSPG2P98160 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC9.09□□□□□ -0.95
HSPG2P98160 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC9.09□□□□□ -0.95
HSPG2P98160 RPL18AP8-201ENST00000486071 528 ntBASIC9.09□□□□□ -0.95
HSPG2P98160 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC9.09□□□□□ -0.95
HSPG2P98160 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC9.09□□□□□ -0.95
HSPG2P98160 DERL2-206ENST00000572834 589 ntTSL 3 BASIC9.09□□□□□ -0.95
HSPG2P98160 EEF1DP7-201ENST00000580496 513 ntBASIC9.09□□□□□ -0.95
HSPG2P98160 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
HSPG2P98160 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
HSPG2P98160 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms