Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC15.06■□□□□ 0
PKNOX1P55347 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC15.06■□□□□ 0
PKNOX1P55347 UBL5-208ENST00000593087 320 ntTSL 3 BASIC15.06■□□□□ 0
PKNOX1P55347 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.06■□□□□ 0
PKNOX1P55347 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.06■□□□□ 0
PKNOX1P55347 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
PKNOX1P55347 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC15.06■□□□□ 0
PKNOX1P55347 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PKNOX1P55347 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC15.06■□□□□ 0
PKNOX1P55347 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC15.06■□□□□ 0
PKNOX1P55347 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PKNOX1P55347 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PKNOX1P55347 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PKNOX1P55347 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.06■□□□□ 0
PKNOX1P55347 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PKNOX1P55347 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PKNOX1P55347 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
PKNOX1P55347 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC15.06■□□□□ 0
PKNOX1P55347 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
PKNOX1P55347 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
PKNOX1P55347 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PKNOX1P55347 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC15.06■□□□□ 0
PKNOX1P55347 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC15.05■□□□□ 0
PKNOX1P55347 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
PKNOX1P55347 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC15.05■□□□□ 0
PKNOX1P55347 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC15.05■□□□□ 0
PKNOX1P55347 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15.05■□□□□ 0
PKNOX1P55347 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ 0
PKNOX1P55347 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
PKNOX1P55347 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
PKNOX1P55347 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC15.05■□□□□ 0
PKNOX1P55347 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ 0
PKNOX1P55347 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
PKNOX1P55347 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
PKNOX1P55347 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
PKNOX1P55347 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC15.05■□□□□ -0
PKNOX1P55347 RPL37AP1-201ENST00000412502 279 ntBASIC15.05■□□□□ -0
PKNOX1P55347 RPL13P2-201ENST00000440687 659 ntBASIC15.05■□□□□ -0
PKNOX1P55347 HLA-V-204ENST00000476601 1289 ntBASIC15.05■□□□□ -0
PKNOX1P55347 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC15.05■□□□□ -0
PKNOX1P55347 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.05■□□□□ -0
PKNOX1P55347 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.05■□□□□ -0
PKNOX1P55347 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.05■□□□□ -0
PKNOX1P55347 AC069262.1-201ENST00000539058 672 ntBASIC15.05■□□□□ -0
PKNOX1P55347 CBFB-203ENST00000561924 584 ntTSL 5 BASIC15.05■□□□□ -0
PKNOX1P55347 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC15.05■□□□□ -0
PKNOX1P55347 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
PKNOX1P55347 TBCB-211ENST00000589996 724 ntTSL 3 BASIC15.05■□□□□ -0
PKNOX1P55347 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ -0
PKNOX1P55347 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.05■□□□□ -0
PKNOX1P55347 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.05■□□□□ -0
PKNOX1P55347 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.05■□□□□ -0
PKNOX1P55347 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.05■□□□□ -0
PKNOX1P55347 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.05■□□□□ -0
PKNOX1P55347 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC15.05■□□□□ -0
PKNOX1P55347 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.05■□□□□ -0
PKNOX1P55347 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.05■□□□□ -0
PKNOX1P55347 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC15.05■□□□□ -0
PKNOX1P55347 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
PKNOX1P55347 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
PKNOX1P55347 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.05■□□□□ -0
PKNOX1P55347 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC15.05■□□□□ -0
PKNOX1P55347 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC15.05■□□□□ -0
PKNOX1P55347 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC15.05■□□□□ -0
PKNOX1P55347 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC15.05■□□□□ -0
PKNOX1P55347 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC15.05■□□□□ -0
PKNOX1P55347 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC15.05■□□□□ -0
PKNOX1P55347 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC15.05■□□□□ -0
PKNOX1P55347 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PKNOX1P55347 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
PKNOX1P55347 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PKNOX1P55347 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
PKNOX1P55347 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PKNOX1P55347 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC15.04■□□□□ -0
PKNOX1P55347 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
PKNOX1P55347 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PKNOX1P55347 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.04■□□□□ -0
PKNOX1P55347 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC15.04■□□□□ -0
PKNOX1P55347 C1R-201ENST00000535233 2211 ntTSL 2 BASIC15.04■□□□□ -0
PKNOX1P55347 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PKNOX1P55347 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC15.04■□□□□ -0
PKNOX1P55347 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PKNOX1P55347 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC15.04■□□□□ -0
PKNOX1P55347 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PKNOX1P55347 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
PKNOX1P55347 CYP2AB1P-202ENST00000454440 1456 ntBASIC15.04■□□□□ -0
PKNOX1P55347 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC15.04■□□□□ -0
PKNOX1P55347 AC012508.2-201ENST00000567613 1472 ntBASIC15.04■□□□□ -0
PKNOX1P55347 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
PKNOX1P55347 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PKNOX1P55347 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
PKNOX1P55347 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PKNOX1P55347 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PKNOX1P55347 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
PKNOX1P55347 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
PKNOX1P55347 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC15.04■□□□□ -0
PKNOX1P55347 CNN2P11-201ENST00000429351 262 ntBASIC15.04■□□□□ -0
PKNOX1P55347 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.04■□□□□ -0
PKNOX1P55347 KRT18P64-201ENST00000434946 1219 ntBASIC15.04■□□□□ -0
PKNOX1P55347 KRT18P43-201ENST00000469825 1281 ntBASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms