Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
NUP98P52948 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
NUP98P52948 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC18.56■□□□□ 0.56
NUP98P52948 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
NUP98P52948 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
NUP98P52948 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
NUP98P52948 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC18.56■□□□□ 0.56
NUP98P52948 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NUP98P52948 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NUP98P52948 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NUP98P52948 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NUP98P52948 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NUP98P52948 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC18.55■□□□□ 0.56
NUP98P52948 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NUP98P52948 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC18.55■□□□□ 0.56
NUP98P52948 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NUP98P52948 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
NUP98P52948 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
NUP98P52948 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC18.55■□□□□ 0.56
NUP98P52948 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC18.55■□□□□ 0.56
NUP98P52948 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC18.55■□□□□ 0.56
NUP98P52948 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NUP98P52948 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NUP98P52948 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NUP98P52948 NCR3-202ENST00000376071 541 ntTSL 5 BASIC18.55■□□□□ 0.56
NUP98P52948 AC026316.1-201ENST00000398900 414 ntBASIC18.55■□□□□ 0.56
NUP98P52948 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC18.55■□□□□ 0.56
NUP98P52948 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC18.55■□□□□ 0.56
NUP98P52948 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC18.55■□□□□ 0.56
NUP98P52948 AC019193.1-201ENST00000506678 823 ntBASIC18.55■□□□□ 0.56
NUP98P52948 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC18.55■□□□□ 0.56
NUP98P52948 AL109837.1-201ENST00000603272 613 ntBASIC18.55■□□□□ 0.56
NUP98P52948 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC18.55■□□□□ 0.56
NUP98P52948 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NUP98P52948 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
NUP98P52948 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NUP98P52948 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
NUP98P52948 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NUP98P52948 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
NUP98P52948 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NUP98P52948 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NUP98P52948 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC18.54■□□□□ 0.56
NUP98P52948 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
NUP98P52948 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NUP98P52948 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NUP98P52948 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC18.54■□□□□ 0.56
NUP98P52948 MPRIPP1-201ENST00000452433 1089 ntBASIC18.54■□□□□ 0.56
NUP98P52948 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC18.54■□□□□ 0.56
NUP98P52948 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NUP98P52948 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC18.54■□□□□ 0.56
NUP98P52948 MIR6727-201ENST00000620702 65 ntBASIC18.54■□□□□ 0.56
NUP98P52948 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NUP98P52948 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC18.54■□□□□ 0.56
NUP98P52948 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NUP98P52948 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NUP98P52948 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NUP98P52948 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NUP98P52948 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NUP98P52948 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NUP98P52948 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
NUP98P52948 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
NUP98P52948 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NUP98P52948 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUP98P52948 PFN2-202ENST00000423691 911 ntTSL 2 BASIC18.53■□□□□ 0.56
NUP98P52948 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
NUP98P52948 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
NUP98P52948 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC18.53■□□□□ 0.56
NUP98P52948 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUP98P52948 FRMPD2B-201ENST00000431305 1347 ntBASIC18.53■□□□□ 0.56
NUP98P52948 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.53■□□□□ 0.56
NUP98P52948 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUP98P52948 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUP98P52948 RAN-210ENST00000541630 1475 ntTSL 2 BASIC18.53■□□□□ 0.56
NUP98P52948 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUP98P52948 AC008894.3-201ENST00000624324 3103 ntBASIC18.53■□□□□ 0.56
NUP98P52948 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
NUP98P52948 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUP98P52948 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NUP98P52948 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
NUP98P52948 LINC01101-201ENST00000622953 1884 ntBASIC18.53■□□□□ 0.56
NUP98P52948 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUP98P52948 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUP98P52948 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
NUP98P52948 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NUP98P52948 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUP98P52948 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
NUP98P52948 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUP98P52948 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NUP98P52948 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NUP98P52948 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NUP98P52948 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
NUP98P52948 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NUP98P52948 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NUP98P52948 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NUP98P52948 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NUP98P52948 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NUP98P52948 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC18.53■□□□□ 0.56
NUP98P52948 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC18.53■□□□□ 0.56
NUP98P52948 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC18.53■□□□□ 0.56
NUP98P52948 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms