Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLCN3P51790 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CLCN3P51790 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.69■□□□□ 0.26
CLCN3P51790 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
CLCN3P51790 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC16.69■□□□□ 0.26
CLCN3P51790 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCN3P51790 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCN3P51790 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLCN3P51790 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC16.68■□□□□ 0.26
CLCN3P51790 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.68■□□□□ 0.26
CLCN3P51790 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.68■□□□□ 0.26
CLCN3P51790 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC16.68■□□□□ 0.26
CLCN3P51790 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
CLCN3P51790 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC16.68■□□□□ 0.26
CLCN3P51790 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 MIR1247-201ENST00000408206 136 ntBASIC16.68■□□□□ 0.26
CLCN3P51790 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC16.68■□□□□ 0.26
CLCN3P51790 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC16.68■□□□□ 0.26
CLCN3P51790 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 AC006033.1-201ENST00000440505 426 ntBASIC16.68■□□□□ 0.26
CLCN3P51790 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC16.68■□□□□ 0.26
CLCN3P51790 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 MESTP3-201ENST00000503460 968 ntBASIC16.68■□□□□ 0.26
CLCN3P51790 FTLP10-202ENST00000505798 471 ntBASIC16.68■□□□□ 0.26
CLCN3P51790 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 AC104982.3-201ENST00000581995 514 ntBASIC16.68■□□□□ 0.26
CLCN3P51790 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CLCN3P51790 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC16.68■□□□□ 0.26
CLCN3P51790 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
CLCN3P51790 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC16.68■□□□□ 0.26
CLCN3P51790 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC16.68■□□□□ 0.26
CLCN3P51790 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
CLCN3P51790 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.68■□□□□ 0.26
CLCN3P51790 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC16.68■□□□□ 0.26
CLCN3P51790 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CLCN3P51790 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.68■□□□□ 0.26
CLCN3P51790 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
CLCN3P51790 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLCN3P51790 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC16.67■□□□□ 0.26
CLCN3P51790 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC16.67■□□□□ 0.26
CLCN3P51790 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLCN3P51790 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
CLCN3P51790 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLCN3P51790 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLCN3P51790 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC16.67■□□□□ 0.26
CLCN3P51790 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLCN3P51790 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
CLCN3P51790 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLCN3P51790 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLCN3P51790 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLCN3P51790 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.67■□□□□ 0.26
CLCN3P51790 REXO1L2P-201ENST00000425429 2069 ntBASIC16.67■□□□□ 0.26
CLCN3P51790 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLCN3P51790 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLCN3P51790 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLCN3P51790 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLCN3P51790 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
CLCN3P51790 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC16.67■□□□□ 0.26
CLCN3P51790 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLCN3P51790 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC16.67■□□□□ 0.26
CLCN3P51790 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC16.67■□□□□ 0.26
CLCN3P51790 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC16.67■□□□□ 0.26
CLCN3P51790 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLCN3P51790 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC16.67■□□□□ 0.26
CLCN3P51790 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC16.67■□□□□ 0.26
CLCN3P51790 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC16.67■□□□□ 0.26
CLCN3P51790 MIR3615-201ENST00000581999 87 ntBASIC16.67■□□□□ 0.26
CLCN3P51790 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLCN3P51790 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC16.67■□□□□ 0.26
CLCN3P51790 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLCN3P51790 AL008638.5-201ENST00000623814 1298 ntBASIC16.67■□□□□ 0.26
CLCN3P51790 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLCN3P51790 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLCN3P51790 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLCN3P51790 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CLCN3P51790 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CLCN3P51790 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms