Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.87□□□□□ -0.03
HNF4AP41235 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.87□□□□□ -0.03
HNF4AP41235 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.87□□□□□ -0.03
HNF4AP41235 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.87□□□□□ -0.03
HNF4AP41235 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.87□□□□□ -0.03
HNF4AP41235 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 OARD1-208ENST00000469104 704 ntTSL 2 BASIC14.87□□□□□ -0.03
HNF4AP41235 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.87□□□□□ -0.03
HNF4AP41235 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.87□□□□□ -0.03
HNF4AP41235 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC14.87□□□□□ -0.03
HNF4AP41235 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.87□□□□□ -0.03
HNF4AP41235 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.87□□□□□ -0.03
HNF4AP41235 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.87□□□□□ -0.03
HNF4AP41235 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.87□□□□□ -0.03
HNF4AP41235 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC14.87□□□□□ -0.03
HNF4AP41235 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
HNF4AP41235 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
HNF4AP41235 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
HNF4AP41235 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
HNF4AP41235 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.87□□□□□ -0.03
HNF4AP41235 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
HNF4AP41235 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
HNF4AP41235 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
HNF4AP41235 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.87□□□□□ -0.03
HNF4AP41235 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC14.86□□□□□ -0.03
HNF4AP41235 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
HNF4AP41235 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 AC013726.1-201ENST00000563747 2285 ntBASIC14.86□□□□□ -0.03
HNF4AP41235 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 AP000845.1-201ENST00000581677 2131 ntBASIC14.86□□□□□ -0.03
HNF4AP41235 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
HNF4AP41235 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 OR2I1P-210ENST00000642037 4691 ntBASIC14.86□□□□□ -0.03
HNF4AP41235 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14.86□□□□□ -0.03
HNF4AP41235 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 GOLGA6L11P-201ENST00000417252 1298 ntBASIC14.86□□□□□ -0.03
HNF4AP41235 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.86□□□□□ -0.03
HNF4AP41235 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 RARRES2P5-201ENST00000564013 466 ntBASIC14.86□□□□□ -0.03
HNF4AP41235 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC14.86□□□□□ -0.03
HNF4AP41235 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.86□□□□□ -0.03
HNF4AP41235 AL132655.2-201ENST00000596276 594 ntBASIC14.86□□□□□ -0.03
HNF4AP41235 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC14.86□□□□□ -0.03
HNF4AP41235 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.86□□□□□ -0.03
HNF4AP41235 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.86□□□□□ -0.03
HNF4AP41235 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
HNF4AP41235 REXO1L2P-201ENST00000425429 2069 ntBASIC14.86□□□□□ -0.03
HNF4AP41235 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC14.86□□□□□ -0.03
HNF4AP41235 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HNF4AP41235 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
HNF4AP41235 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
HNF4AP41235 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 LINC00528-201ENST00000600723 2160 ntBASIC14.85□□□□□ -0.03
HNF4AP41235 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms