Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SLC6A4P31645 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SLC6A4P31645 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SLC6A4P31645 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC15.61■□□□□ 0.09
SLC6A4P31645 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SLC6A4P31645 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
SLC6A4P31645 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
SLC6A4P31645 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SLC6A4P31645 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SLC6A4P31645 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC15.61■□□□□ 0.09
SLC6A4P31645 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
SLC6A4P31645 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC15.61■□□□□ 0.09
SLC6A4P31645 PFN2-215ENST00000497148 743 ntTSL 4 BASIC15.61■□□□□ 0.09
SLC6A4P31645 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC15.61■□□□□ 0.09
SLC6A4P31645 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC15.61■□□□□ 0.09
SLC6A4P31645 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC15.61■□□□□ 0.09
SLC6A4P31645 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC15.61■□□□□ 0.09
SLC6A4P31645 HNRNPA1P48-202ENST00000565308 961 ntBASIC15.61■□□□□ 0.09
SLC6A4P31645 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC15.61■□□□□ 0.09
SLC6A4P31645 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
SLC6A4P31645 AL603764.1-201ENST00000636452 321 ntBASIC15.61■□□□□ 0.09
SLC6A4P31645 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SLC6A4P31645 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.61■□□□□ 0.09
SLC6A4P31645 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SLC6A4P31645 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SLC6A4P31645 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SLC6A4P31645 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC15.61■□□□□ 0.09
SLC6A4P31645 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SLC6A4P31645 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
SLC6A4P31645 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
SLC6A4P31645 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
SLC6A4P31645 AHCYP2-201ENST00000430630 1300 ntBASIC15.61■□□□□ 0.09
SLC6A4P31645 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SLC6A4P31645 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SLC6A4P31645 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SLC6A4P31645 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SLC6A4P31645 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SLC6A4P31645 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SLC6A4P31645 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC15.61■□□□□ 0.09
SLC6A4P31645 WASH3P-207ENST00000560956 1394 ntBASIC15.61■□□□□ 0.09
SLC6A4P31645 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SLC6A4P31645 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
SLC6A4P31645 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.6■□□□□ 0.09
SLC6A4P31645 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC15.6■□□□□ 0.09
SLC6A4P31645 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC15.6■□□□□ 0.09
SLC6A4P31645 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SLC6A4P31645 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SLC6A4P31645 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SLC6A4P31645 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SLC6A4P31645 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.6■□□□□ 0.09
SLC6A4P31645 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SLC6A4P31645 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC15.6■□□□□ 0.09
SLC6A4P31645 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC15.6■□□□□ 0.09
SLC6A4P31645 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SLC6A4P31645 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
SLC6A4P31645 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.6■□□□□ 0.09
SLC6A4P31645 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SLC6A4P31645 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SLC6A4P31645 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.6■□□□□ 0.09
SLC6A4P31645 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SLC6A4P31645 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
SLC6A4P31645 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SLC6A4P31645 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC15.6■□□□□ 0.09
SLC6A4P31645 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SLC6A4P31645 REXO1L6P-201ENST00000603433 1515 ntBASIC15.6■□□□□ 0.09
SLC6A4P31645 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
SLC6A4P31645 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
SLC6A4P31645 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
SLC6A4P31645 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
SLC6A4P31645 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
SLC6A4P31645 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.6■□□□□ 0.09
SLC6A4P31645 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SLC6A4P31645 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SLC6A4P31645 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC15.6■□□□□ 0.09
SLC6A4P31645 CD8B2-202ENST00000417670 633 ntBASIC15.6■□□□□ 0.09
SLC6A4P31645 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC15.6■□□□□ 0.09
SLC6A4P31645 OLR1-203ENST00000432556 950 ntTSL 2 BASIC15.6■□□□□ 0.09
SLC6A4P31645 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SLC6A4P31645 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC15.6■□□□□ 0.09
SLC6A4P31645 RNA5SP412-201ENST00000516234 123 ntBASIC15.6■□□□□ 0.09
SLC6A4P31645 AP003171.2-201ENST00000528208 925 ntBASIC15.6■□□□□ 0.09
SLC6A4P31645 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC15.6■□□□□ 0.09
SLC6A4P31645 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC15.6■□□□□ 0.09
SLC6A4P31645 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC15.6■□□□□ 0.09
SLC6A4P31645 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC15.6■□□□□ 0.09
SLC6A4P31645 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC15.6■□□□□ 0.09
SLC6A4P31645 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SLC6A4P31645 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC15.6■□□□□ 0.09
SLC6A4P31645 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC15.6■□□□□ 0.09
SLC6A4P31645 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.6■□□□□ 0.09
SLC6A4P31645 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.6■□□□□ 0.09
SLC6A4P31645 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.6■□□□□ 0.09
SLC6A4P31645 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
SLC6A4P31645 CLUHP2-201ENST00000426660 1303 ntBASIC15.6■□□□□ 0.09
SLC6A4P31645 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC15.6■□□□□ 0.09
SLC6A4P31645 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SLC6A4P31645 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.6■□□□□ 0.09
SLC6A4P31645 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
SLC6A4P31645 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
SLC6A4P31645 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms