Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC13.61□□□□□ -0.23
HOXC12P31275 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXC12P31275 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXC12P31275 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXC12P31275 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXC12P31275 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC13.61□□□□□ -0.23
HOXC12P31275 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXC12P31275 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXC12P31275 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
HOXC12P31275 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
HOXC12P31275 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC13.61□□□□□ -0.23
HOXC12P31275 TP73-209ENST00000603362 1668 ntTSL 5 BASIC13.61□□□□□ -0.23
HOXC12P31275 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXC12P31275 LBX2-201ENST00000341396 886 ntTSL 3 BASIC13.61□□□□□ -0.23
HOXC12P31275 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HOXC12P31275 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXC12P31275 APOC3-202ENST00000375345 604 ntTSL 5 BASIC13.61□□□□□ -0.23
HOXC12P31275 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXC12P31275 SUN1-204ENST00000403868 978 ntTSL 2 BASIC13.61□□□□□ -0.23
HOXC12P31275 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC13.61□□□□□ -0.23
HOXC12P31275 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HOXC12P31275 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HOXC12P31275 KLF2P4-201ENST00000451959 1225 ntBASIC13.61□□□□□ -0.23
HOXC12P31275 CTBP2P5-201ENST00000454986 1264 ntBASIC13.61□□□□□ -0.23
HOXC12P31275 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC13.61□□□□□ -0.23
HOXC12P31275 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXC12P31275 RNA5SP412-201ENST00000516234 123 ntBASIC13.61□□□□□ -0.23
HOXC12P31275 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC13.61□□□□□ -0.23
HOXC12P31275 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
HOXC12P31275 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC13.61□□□□□ -0.23
HOXC12P31275 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC13.61□□□□□ -0.23
HOXC12P31275 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC13.61□□□□□ -0.23
HOXC12P31275 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC13.61□□□□□ -0.23
HOXC12P31275 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HOXC12P31275 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXC12P31275 GPR39-203ENST00000622084 900 ntTSL 5 BASIC13.61□□□□□ -0.23
HOXC12P31275 CU634019.7-201ENST00000624153 1185 ntBASIC13.61□□□□□ -0.23
HOXC12P31275 FP236241.2-201ENST00000624906 1185 ntBASIC13.61□□□□□ -0.23
HOXC12P31275 AC012183.1-201ENST00000625197 499 ntBASIC13.61□□□□□ -0.23
HOXC12P31275 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC13.61□□□□□ -0.23
HOXC12P31275 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXC12P31275 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXC12P31275 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXC12P31275 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
HOXC12P31275 KRT8P22-201ENST00000562317 1415 ntBASIC13.61□□□□□ -0.23
HOXC12P31275 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXC12P31275 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXC12P31275 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC13.61□□□□□ -0.23
HOXC12P31275 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC13.61□□□□□ -0.23
HOXC12P31275 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC13.61□□□□□ -0.23
HOXC12P31275 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
HOXC12P31275 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
HOXC12P31275 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXC12P31275 DKFZP434A062-201ENST00000573103 5021 ntBASIC13.61□□□□□ -0.23
HOXC12P31275 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HOXC12P31275 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
HOXC12P31275 PDIA3P1-201ENST00000471856 1510 ntBASIC13.6□□□□□ -0.23
HOXC12P31275 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC13.6□□□□□ -0.23
HOXC12P31275 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC13.6□□□□□ -0.23
HOXC12P31275 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
HOXC12P31275 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
HOXC12P31275 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXC12P31275 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HOXC12P31275 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXC12P31275 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXC12P31275 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HOXC12P31275 BRWD1P1-201ENST00000401091 371 ntBASIC13.6□□□□□ -0.23
HOXC12P31275 RPL5P21-201ENST00000404620 815 ntBASIC13.6□□□□□ -0.23
HOXC12P31275 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC13.6□□□□□ -0.23
HOXC12P31275 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC13.6□□□□□ -0.23
HOXC12P31275 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC13.6□□□□□ -0.23
HOXC12P31275 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXC12P31275 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
HOXC12P31275 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXC12P31275 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
HOXC12P31275 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC13.6□□□□□ -0.23
HOXC12P31275 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC13.6□□□□□ -0.23
HOXC12P31275 SLC25A47P1-201ENST00000531577 414 ntBASIC13.6□□□□□ -0.23
HOXC12P31275 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC13.6□□□□□ -0.23
HOXC12P31275 IGHV3OR16-16-201ENST00000563644 343 ntBASIC13.6□□□□□ -0.23
HOXC12P31275 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXC12P31275 AC120045.2-201ENST00000567334 178 ntBASIC13.6□□□□□ -0.23
HOXC12P31275 PAM16-204ENST00000571941 674 ntTSL 3 BASIC13.6□□□□□ -0.23
HOXC12P31275 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC13.6□□□□□ -0.23
HOXC12P31275 BRI3BPP1-201ENST00000594224 787 ntBASIC13.6□□□□□ -0.23
HOXC12P31275 AC244093.1-201ENST00000610837 814 ntBASIC13.6□□□□□ -0.23
HOXC12P31275 RPSAP52-203ENST00000622976 1023 ntBASIC13.6□□□□□ -0.23
HOXC12P31275 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
HOXC12P31275 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXC12P31275 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXC12P31275 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXC12P31275 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXC12P31275 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
HOXC12P31275 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXC12P31275 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
HOXC12P31275 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXC12P31275 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC13.6□□□□□ -0.23
HOXC12P31275 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
HOXC12P31275 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXC12P31275 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms