Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX1P28360 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.03□□□□□ -0.16
MSX1P28360 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.03□□□□□ -0.16
MSX1P28360 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC14.03□□□□□ -0.16
MSX1P28360 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX1P28360 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
MSX1P28360 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC14.03□□□□□ -0.16
MSX1P28360 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX1P28360 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
MSX1P28360 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX1P28360 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC14.03□□□□□ -0.16
MSX1P28360 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX1P28360 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
MSX1P28360 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
MSX1P28360 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
MSX1P28360 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
MSX1P28360 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
MSX1P28360 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
MSX1P28360 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
MSX1P28360 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
MSX1P28360 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.02□□□□□ -0.16
MSX1P28360 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.02□□□□□ -0.16
MSX1P28360 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC14.02□□□□□ -0.16
MSX1P28360 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
MSX1P28360 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.02□□□□□ -0.16
MSX1P28360 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
MSX1P28360 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
MSX1P28360 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
MSX1P28360 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
MSX1P28360 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
MSX1P28360 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
MSX1P28360 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
MSX1P28360 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
MSX1P28360 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC14.02□□□□□ -0.16
MSX1P28360 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
MSX1P28360 AC093525.8-201ENST00000624099 1342 ntBASIC14.02□□□□□ -0.17
MSX1P28360 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
MSX1P28360 FAM86MP-201ENST00000340703 885 ntBASIC14.02□□□□□ -0.17
MSX1P28360 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
MSX1P28360 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
MSX1P28360 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
MSX1P28360 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
MSX1P28360 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
MSX1P28360 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC14.02□□□□□ -0.17
MSX1P28360 LIAS-205ENST00000509519 1005 ntTSL 2 BASIC14.02□□□□□ -0.17
MSX1P28360 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.02□□□□□ -0.17
MSX1P28360 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.02□□□□□ -0.17
MSX1P28360 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
MSX1P28360 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.02□□□□□ -0.17
MSX1P28360 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.02□□□□□ -0.17
MSX1P28360 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC14.02□□□□□ -0.17
MSX1P28360 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.02□□□□□ -0.17
MSX1P28360 AC233724.13-201ENST00000598383 410 ntBASIC14.02□□□□□ -0.17
MSX1P28360 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.02□□□□□ -0.17
MSX1P28360 BX539320.1-201ENST00000623759 877 ntBASIC14.02□□□□□ -0.17
MSX1P28360 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
MSX1P28360 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC14.02□□□□□ -0.17
MSX1P28360 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.02□□□□□ -0.17
MSX1P28360 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.02□□□□□ -0.17
MSX1P28360 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
MSX1P28360 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
MSX1P28360 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
MSX1P28360 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.02□□□□□ -0.17
MSX1P28360 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
MSX1P28360 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
MSX1P28360 AC104640.1-201ENST00000562617 2109 ntBASIC14.02□□□□□ -0.17
MSX1P28360 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
MSX1P28360 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
MSX1P28360 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
MSX1P28360 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
MSX1P28360 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
MSX1P28360 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 AC073347.1-201ENST00000421633 2643 ntBASIC14.01□□□□□ -0.17
MSX1P28360 AC007787.1-201ENST00000588095 1583 ntBASIC14.01□□□□□ -0.17
MSX1P28360 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC14.01□□□□□ -0.17
MSX1P28360 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
MSX1P28360 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.01□□□□□ -0.17
MSX1P28360 RAB5A-203ENST00000422242 1443 ntTSL 2 BASIC14.01□□□□□ -0.17
MSX1P28360 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
MSX1P28360 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.01□□□□□ -0.17
MSX1P28360 AC018665.1-201ENST00000622927 1362 ntBASIC14.01□□□□□ -0.17
MSX1P28360 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 ANKRD19P-201ENST00000338192 862 ntBASIC14.01□□□□□ -0.17
MSX1P28360 ACKR1-201ENST00000368121 1240 ntBASIC14.01□□□□□ -0.17
MSX1P28360 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 KRTAP4-4-201ENST00000390661 1081 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
MSX1P28360 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC14.01□□□□□ -0.17
MSX1P28360 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms