Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC14.31□□□□□ -0.12
COL5A1P20908 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC14.31□□□□□ -0.12
COL5A1P20908 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC14.31□□□□□ -0.12
COL5A1P20908 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 RBM8B-201ENST00000555532 525 ntBASIC14.31□□□□□ -0.12
COL5A1P20908 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC14.31□□□□□ -0.12
COL5A1P20908 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 AL109954.1-202ENST00000564051 2148 ntBASIC14.31□□□□□ -0.12
COL5A1P20908 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 AC023024.2-201ENST00000623561 1993 ntBASIC14.31□□□□□ -0.12
COL5A1P20908 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC14.31□□□□□ -0.12
COL5A1P20908 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL5A1P20908 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC14.3□□□□□ -0.12
COL5A1P20908 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
COL5A1P20908 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
COL5A1P20908 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL5A1P20908 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.3□□□□□ -0.12
COL5A1P20908 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC14.3□□□□□ -0.12
COL5A1P20908 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.3□□□□□ -0.12
COL5A1P20908 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL5A1P20908 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL5A1P20908 LINC01165-201ENST00000445190 1623 ntBASIC14.3□□□□□ -0.12
COL5A1P20908 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL5A1P20908 AP000356.3-201ENST00000382243 753 ntBASIC14.3□□□□□ -0.12
COL5A1P20908 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL5A1P20908 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL5A1P20908 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC14.3□□□□□ -0.12
COL5A1P20908 XBP1P1-201ENST00000436573 652 ntBASIC14.3□□□□□ -0.12
COL5A1P20908 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
COL5A1P20908 DUTP3-201ENST00000450025 415 ntBASIC14.3□□□□□ -0.12
COL5A1P20908 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL5A1P20908 PFN2-206ENST00000461930 606 ntTSL 4 BASIC14.3□□□□□ -0.12
COL5A1P20908 RN7SL81P-201ENST00000493781 261 ntBASIC14.3□□□□□ -0.12
COL5A1P20908 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC14.3□□□□□ -0.12
COL5A1P20908 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC14.3□□□□□ -0.12
COL5A1P20908 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC14.3□□□□□ -0.12
COL5A1P20908 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC14.3□□□□□ -0.12
COL5A1P20908 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
COL5A1P20908 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC14.3□□□□□ -0.12
COL5A1P20908 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC14.3□□□□□ -0.12
COL5A1P20908 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC14.3□□□□□ -0.12
COL5A1P20908 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
COL5A1P20908 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC14.3□□□□□ -0.12
COL5A1P20908 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL5A1P20908 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
COL5A1P20908 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.3□□□□□ -0.12
COL5A1P20908 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
COL5A1P20908 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL5A1P20908 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC14.3□□□□□ -0.12
COL5A1P20908 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL5A1P20908 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
COL5A1P20908 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL5A1P20908 AC136759.1-202ENST00000530858 2194 ntBASIC14.3□□□□□ -0.12
COL5A1P20908 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL5A1P20908 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL5A1P20908 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
COL5A1P20908 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC14.29□□□□□ -0.12
COL5A1P20908 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 RNA5SP359-201ENST00000364838 113 ntBASIC14.29□□□□□ -0.12
COL5A1P20908 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC14.29□□□□□ -0.12
COL5A1P20908 RPL13AP19-201ENST00000434320 584 ntBASIC14.29□□□□□ -0.12
COL5A1P20908 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
COL5A1P20908 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC14.29□□□□□ -0.12
COL5A1P20908 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
COL5A1P20908 FOS-204ENST00000554617 796 ntTSL 2 BASIC14.29□□□□□ -0.12
COL5A1P20908 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC14.29□□□□□ -0.12
COL5A1P20908 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
COL5A1P20908 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC14.29□□□□□ -0.12
COL5A1P20908 GMFG-209ENST00000600322 622 ntTSL 5 BASIC14.29□□□□□ -0.12
COL5A1P20908 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
COL5A1P20908 MIR6756-201ENST00000616240 63 ntBASIC14.29□□□□□ -0.12
COL5A1P20908 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC14.29□□□□□ -0.12
COL5A1P20908 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14.29□□□□□ -0.12
COL5A1P20908 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 KRT18P9-201ENST00000604826 1300 ntBASIC14.29□□□□□ -0.12
COL5A1P20908 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
COL5A1P20908 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.29□□□□□ -0.12
COL5A1P20908 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
COL5A1P20908 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms