Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDC1P18827 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.56□□□□□ -0.08
SDC1P18827 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDC1P18827 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.56□□□□□ -0.08
SDC1P18827 AC113367.3-201ENST00000508316 1912 ntBASIC14.56□□□□□ -0.08
SDC1P18827 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.56□□□□□ -0.08
SDC1P18827 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDC1P18827 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
SDC1P18827 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SDC1P18827 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
SDC1P18827 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SDC1P18827 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
SDC1P18827 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
SDC1P18827 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC14.56□□□□□ -0.08
SDC1P18827 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDC1P18827 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDC1P18827 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDC1P18827 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.55□□□□□ -0.08
SDC1P18827 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.55□□□□□ -0.08
SDC1P18827 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDC1P18827 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDC1P18827 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
SDC1P18827 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDC1P18827 BX640514.1-201ENST00000583223 1918 ntBASIC14.55□□□□□ -0.08
SDC1P18827 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDC1P18827 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.55□□□□□ -0.08
SDC1P18827 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDC1P18827 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDC1P18827 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDC1P18827 VMA21-202ENST00000370361 693 ntTSL 5 BASIC14.55□□□□□ -0.08
SDC1P18827 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SDC1P18827 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
SDC1P18827 LBH-203ENST00000404397 543 ntTSL 4 BASIC14.55□□□□□ -0.08
SDC1P18827 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.55□□□□□ -0.08
SDC1P18827 AC055876.3-201ENST00000431496 288 ntBASIC14.55□□□□□ -0.08
SDC1P18827 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.55□□□□□ -0.08
SDC1P18827 STOM-203ENST00000538954 1257 ntTSL 5 BASIC14.55□□□□□ -0.08
SDC1P18827 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC14.55□□□□□ -0.08
SDC1P18827 AC138649.4-201ENST00000612222 287 ntBASIC14.55□□□□□ -0.08
SDC1P18827 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.55□□□□□ -0.08
SDC1P18827 AC093525.8-201ENST00000624099 1342 ntBASIC14.55□□□□□ -0.08
SDC1P18827 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SDC1P18827 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDC1P18827 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDC1P18827 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDC1P18827 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDC1P18827 DRD5P1-201ENST00000456605 1438 ntBASIC14.55□□□□□ -0.08
SDC1P18827 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDC1P18827 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SDC1P18827 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDC1P18827 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
SDC1P18827 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDC1P18827 MPI-203ENST00000535694 1523 ntTSL 2 BASIC14.55□□□□□ -0.08
SDC1P18827 AC022144.1-201ENST00000602255 1580 ntBASIC14.55□□□□□ -0.08
SDC1P18827 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
SDC1P18827 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDC1P18827 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDC1P18827 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDC1P18827 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDC1P18827 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SDC1P18827 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.55□□□□□ -0.08
SDC1P18827 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
SDC1P18827 FES-203ENST00000394302 2133 ntTSL 5 BASIC14.54□□□□□ -0.08
SDC1P18827 UCKL1-AS1-201ENST00000623569 3602 ntBASIC14.54□□□□□ -0.08
SDC1P18827 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SDC1P18827 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
SDC1P18827 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
SDC1P18827 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDC1P18827 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC14.54□□□□□ -0.08
SDC1P18827 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDC1P18827 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDC1P18827 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SDC1P18827 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDC1P18827 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDC1P18827 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.54□□□□□ -0.08
SDC1P18827 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.54□□□□□ -0.08
SDC1P18827 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.54□□□□□ -0.08
SDC1P18827 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDC1P18827 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.54□□□□□ -0.08
SDC1P18827 HLA-K-203ENST00000430151 1046 ntBASIC14.54□□□□□ -0.08
SDC1P18827 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.54□□□□□ -0.08
SDC1P18827 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC14.54□□□□□ -0.08
SDC1P18827 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.54□□□□□ -0.08
SDC1P18827 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.54□□□□□ -0.08
SDC1P18827 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SDC1P18827 AC104794.3-201ENST00000566840 1248 ntBASIC14.54□□□□□ -0.08
SDC1P18827 AC107373.2-201ENST00000607735 490 ntBASIC14.54□□□□□ -0.08
SDC1P18827 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDC1P18827 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
SDC1P18827 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SDC1P18827 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
SDC1P18827 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDC1P18827 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.54□□□□□ -0.08
SDC1P18827 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDC1P18827 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDC1P18827 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDC1P18827 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDC1P18827 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SDC1P18827 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.54□□□□□ -0.08
SDC1P18827 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms