Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC15.12■□□□□ 0.01
COL6A2P12110 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC15.12■□□□□ 0.01
COL6A2P12110 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC15.12■□□□□ 0.01
COL6A2P12110 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC15.12■□□□□ 0.01
COL6A2P12110 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC15.12■□□□□ 0.01
COL6A2P12110 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A2P12110 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A2P12110 AL136317.3-201ENST00000618497 906 ntBASIC15.12■□□□□ 0.01
COL6A2P12110 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A2P12110 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A2P12110 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
COL6A2P12110 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
COL6A2P12110 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A2P12110 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A2P12110 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.12■□□□□ 0.01
COL6A2P12110 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A2P12110 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A2P12110 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
COL6A2P12110 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A2P12110 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A2P12110 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A2P12110 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
COL6A2P12110 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
COL6A2P12110 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A2P12110 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
COL6A2P12110 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A2P12110 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A2P12110 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A2P12110 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC15.11■□□□□ 0.01
COL6A2P12110 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC15.11■□□□□ 0.01
COL6A2P12110 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A2P12110 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15.11■□□□□ 0.01
COL6A2P12110 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A2P12110 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
COL6A2P12110 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.11■□□□□ 0.01
COL6A2P12110 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A2P12110 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC15.11■□□□□ 0.01
COL6A2P12110 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A2P12110 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC15.11■□□□□ 0.01
COL6A2P12110 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC15.11■□□□□ 0.01
COL6A2P12110 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC15.11■□□□□ 0.01
COL6A2P12110 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A2P12110 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A2P12110 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
COL6A2P12110 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A2P12110 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC15.11■□□□□ 0.01
COL6A2P12110 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A2P12110 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A2P12110 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.11■□□□□ 0.01
COL6A2P12110 SLBP-205ENST00000488267 987 ntTSL 2 BASIC15.11■□□□□ 0.01
COL6A2P12110 TIMM17BP1-201ENST00000545713 516 ntBASIC15.11■□□□□ 0.01
COL6A2P12110 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.11■□□□□ 0.01
COL6A2P12110 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
COL6A2P12110 AC092337.1-201ENST00000568699 1129 ntBASIC15.11■□□□□ 0.01
COL6A2P12110 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.11■□□□□ 0.01
COL6A2P12110 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC15.11■□□□□ 0.01
COL6A2P12110 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.11■□□□□ 0.01
COL6A2P12110 AC027612.4-201ENST00000605371 583 ntBASIC15.11■□□□□ 0.01
COL6A2P12110 5S_rRNA.22-201ENST00000614916 106 ntBASIC15.11■□□□□ 0.01
COL6A2P12110 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC15.11■□□□□ 0.01
COL6A2P12110 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A2P12110 AC005252.3-201ENST00000623855 2258 ntBASIC15.11■□□□□ 0.01
COL6A2P12110 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A2P12110 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A2P12110 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A2P12110 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
COL6A2P12110 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A2P12110 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A2P12110 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A2P12110 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.11■□□□□ 0.01
COL6A2P12110 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A2P12110 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
COL6A2P12110 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC15.11■□□□□ 0.01
COL6A2P12110 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A2P12110 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A2P12110 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
COL6A2P12110 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
COL6A2P12110 INTS4P1-203ENST00000641008 3683 ntBASIC15.11■□□□□ 0.01
COL6A2P12110 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A2P12110 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC15.1■□□□□ 0.01
COL6A2P12110 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A2P12110 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A2P12110 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A2P12110 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A2P12110 OS9-204ENST00000389146 2091 ntTSL 2 BASIC15.1■□□□□ 0.01
COL6A2P12110 AC015802.1-201ENST00000588104 1449 ntBASIC15.1■□□□□ 0.01
COL6A2P12110 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
COL6A2P12110 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A2P12110 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A2P12110 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A2P12110 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A2P12110 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC15.1■□□□□ 0.01
COL6A2P12110 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A2P12110 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
COL6A2P12110 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A2P12110 HSPA7-201ENST00000445535 1927 ntBASIC15.1■□□□□ 0.01
COL6A2P12110 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A2P12110 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A2P12110 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A2P12110 HNRNPFP1-201ENST00000391730 1133 ntBASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms