Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HOXC4P09017 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
HOXC4P09017 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
HOXC4P09017 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
HOXC4P09017 AC010141.1-201ENST00000411585 623 ntBASIC14.76□□□□□ -0.05
HOXC4P09017 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC14.76□□□□□ -0.05
HOXC4P09017 AC126915.1-201ENST00000522847 1038 ntBASIC14.76□□□□□ -0.05
HOXC4P09017 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HOXC4P09017 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC14.76□□□□□ -0.05
HOXC4P09017 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HOXC4P09017 AL023803.2-201ENST00000620080 638 ntBASIC14.76□□□□□ -0.05
HOXC4P09017 AC023090.2-201ENST00000625182 2110 ntBASIC14.76□□□□□ -0.05
HOXC4P09017 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HOXC4P09017 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HOXC4P09017 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HOXC4P09017 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HOXC4P09017 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
HOXC4P09017 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HOXC4P09017 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
HOXC4P09017 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HOXC4P09017 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HOXC4P09017 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.76□□□□□ -0.05
HOXC4P09017 HARS-202ENST00000415192 1401 ntTSL 2 BASIC14.75□□□□□ -0.05
HOXC4P09017 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC14.75□□□□□ -0.05
HOXC4P09017 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXC4P09017 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXC4P09017 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXC4P09017 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
HOXC4P09017 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HOXC4P09017 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC14.75□□□□□ -0.05
HOXC4P09017 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXC4P09017 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.75□□□□□ -0.05
HOXC4P09017 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
HOXC4P09017 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXC4P09017 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXC4P09017 GRN-222ENST00000639447 1314 ntTSL 2 BASIC14.75□□□□□ -0.05
HOXC4P09017 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXC4P09017 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXC4P09017 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXC4P09017 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXC4P09017 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXC4P09017 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXC4P09017 SMS-201ENST00000379404 1174 ntTSL 3 BASIC14.75□□□□□ -0.05
HOXC4P09017 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC14.75□□□□□ -0.05
HOXC4P09017 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC14.75□□□□□ -0.05
HOXC4P09017 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC14.75□□□□□ -0.05
HOXC4P09017 OARD1-212ENST00000482515 832 ntTSL 2 BASIC14.75□□□□□ -0.05
HOXC4P09017 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HOXC4P09017 ZNF767P-206ENST00000513792 565 ntBASIC14.75□□□□□ -0.05
HOXC4P09017 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC14.75□□□□□ -0.05
HOXC4P09017 VPS18-202ENST00000558474 873 ntTSL 3 BASIC14.75□□□□□ -0.05
HOXC4P09017 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC14.75□□□□□ -0.05
HOXC4P09017 MIR4683-201ENST00000579659 81 ntBASIC14.75□□□□□ -0.05
HOXC4P09017 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC14.75□□□□□ -0.05
HOXC4P09017 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC14.75□□□□□ -0.05
HOXC4P09017 AC243960.2-201ENST00000600996 747 ntBASIC14.75□□□□□ -0.05
HOXC4P09017 AC244093.1-201ENST00000610837 814 ntBASIC14.75□□□□□ -0.05
HOXC4P09017 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HOXC4P09017 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXC4P09017 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXC4P09017 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXC4P09017 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC14.75□□□□□ -0.05
HOXC4P09017 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
HOXC4P09017 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
HOXC4P09017 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
HOXC4P09017 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC14.75□□□□□ -0.05
HOXC4P09017 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
HOXC4P09017 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.75□□□□□ -0.05
HOXC4P09017 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXC4P09017 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
HOXC4P09017 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC14.75□□□□□ -0.05
HOXC4P09017 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HOXC4P09017 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HOXC4P09017 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC14.75□□□□□ -0.05
HOXC4P09017 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXC4P09017 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
HOXC4P09017 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.75□□□□□ -0.05
HOXC4P09017 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXC4P09017 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC14.74□□□□□ -0.05
HOXC4P09017 ZBED1P1-201ENST00000502364 1930 ntBASIC14.74□□□□□ -0.05
HOXC4P09017 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 INE2-201ENST00000630399 1874 ntBASIC14.74□□□□□ -0.05
HOXC4P09017 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 AL109954.1-202ENST00000564051 2148 ntBASIC14.74□□□□□ -0.05
HOXC4P09017 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
HOXC4P09017 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 AGER-203ENST00000375065 665 ntTSL 2 BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms