Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC16.05■□□□□ 0.16
APOEP02649 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
APOEP02649 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.05■□□□□ 0.16
APOEP02649 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC16.05■□□□□ 0.16
APOEP02649 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
APOEP02649 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
APOEP02649 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
APOEP02649 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
APOEP02649 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.05■□□□□ 0.16
APOEP02649 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
APOEP02649 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16.05■□□□□ 0.16
APOEP02649 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
APOEP02649 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
APOEP02649 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
APOEP02649 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
APOEP02649 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
APOEP02649 PCDHA3-202ENST00000532566 4594 ntBASIC16.04■□□□□ 0.16
APOEP02649 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC16.04■□□□□ 0.16
APOEP02649 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.04■□□□□ 0.16
APOEP02649 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
APOEP02649 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
APOEP02649 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.04■□□□□ 0.16
APOEP02649 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
APOEP02649 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
APOEP02649 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.04■□□□□ 0.16
APOEP02649 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
APOEP02649 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
APOEP02649 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
APOEP02649 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC16.04■□□□□ 0.16
APOEP02649 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
APOEP02649 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
APOEP02649 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
APOEP02649 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC16.04■□□□□ 0.16
APOEP02649 RN7SL837P-201ENST00000463010 287 ntBASIC16.04■□□□□ 0.16
APOEP02649 GAPDHP40-201ENST00000505218 1006 ntBASIC16.04■□□□□ 0.16
APOEP02649 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC16.04■□□□□ 0.16
APOEP02649 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC16.04■□□□□ 0.16
APOEP02649 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
APOEP02649 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.04■□□□□ 0.16
APOEP02649 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
APOEP02649 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC16.04■□□□□ 0.16
APOEP02649 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC16.04■□□□□ 0.16
APOEP02649 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
APOEP02649 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.04■□□□□ 0.16
APOEP02649 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
APOEP02649 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
APOEP02649 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
APOEP02649 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.04■□□□□ 0.16
APOEP02649 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC16.04■□□□□ 0.16
APOEP02649 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
APOEP02649 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
APOEP02649 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC16.04■□□□□ 0.16
APOEP02649 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC16.04■□□□□ 0.16
APOEP02649 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
APOEP02649 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
APOEP02649 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
APOEP02649 STK33-217ENST00000534493 1895 ntTSL 2 BASIC16.03■□□□□ 0.16
APOEP02649 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.03■□□□□ 0.16
APOEP02649 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
APOEP02649 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
APOEP02649 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.03■□□□□ 0.16
APOEP02649 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
APOEP02649 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
APOEP02649 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC16.03■□□□□ 0.16
APOEP02649 KRT8P44-201ENST00000441609 1350 ntBASIC16.03■□□□□ 0.16
APOEP02649 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
APOEP02649 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
APOEP02649 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
APOEP02649 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC16.03■□□□□ 0.16
APOEP02649 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
APOEP02649 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
APOEP02649 AC063926.2-201ENST00000623766 1308 ntBASIC16.03■□□□□ 0.16
APOEP02649 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.03■□□□□ 0.16
APOEP02649 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
APOEP02649 TEX30-203ENST00000376022 828 ntTSL 2 BASIC16.03■□□□□ 0.16
APOEP02649 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
APOEP02649 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
APOEP02649 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC16.03■□□□□ 0.16
APOEP02649 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC16.03■□□□□ 0.16
APOEP02649 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC16.03■□□□□ 0.16
APOEP02649 AC007389.4-201ENST00000454674 793 ntBASIC16.03■□□□□ 0.16
APOEP02649 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC16.03■□□□□ 0.16
APOEP02649 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.03■□□□□ 0.16
APOEP02649 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
APOEP02649 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
APOEP02649 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.03■□□□□ 0.16
APOEP02649 INO80C-210ENST00000590757 595 ntTSL 2 BASIC16.03■□□□□ 0.16
APOEP02649 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC16.03■□□□□ 0.16
APOEP02649 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
APOEP02649 AL645728.2-202ENST00000641679 227 ntBASIC16.03■□□□□ 0.16
APOEP02649 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
APOEP02649 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
APOEP02649 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
APOEP02649 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
APOEP02649 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
APOEP02649 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
APOEP02649 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
APOEP02649 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
APOEP02649 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
APOEP02649 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms