Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC13.64□□□□□ -0.23
CNOT4O95628 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
CNOT4O95628 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
CNOT4O95628 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC13.64□□□□□ -0.23
CNOT4O95628 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC13.64□□□□□ -0.23
CNOT4O95628 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC13.64□□□□□ -0.23
CNOT4O95628 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC13.64□□□□□ -0.23
CNOT4O95628 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
CNOT4O95628 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC13.64□□□□□ -0.23
CNOT4O95628 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 AP005482.1-201ENST00000563722 1273 ntBASIC13.64□□□□□ -0.23
CNOT4O95628 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC13.64□□□□□ -0.23
CNOT4O95628 AC010319.3-201ENST00000597028 470 ntBASIC13.64□□□□□ -0.23
CNOT4O95628 AC133552.6-201ENST00000613406 534 ntBASIC13.64□□□□□ -0.23
CNOT4O95628 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC13.64□□□□□ -0.23
CNOT4O95628 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
CNOT4O95628 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC13.64□□□□□ -0.23
CNOT4O95628 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC13.64□□□□□ -0.23
CNOT4O95628 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
CNOT4O95628 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC13.64□□□□□ -0.23
CNOT4O95628 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CNOT4O95628 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC13.64□□□□□ -0.23
CNOT4O95628 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
CNOT4O95628 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CNOT4O95628 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
CNOT4O95628 LINC02228-204ENST00000642115 2962 ntBASIC13.63□□□□□ -0.23
CNOT4O95628 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
CNOT4O95628 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CNOT4O95628 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
CNOT4O95628 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CNOT4O95628 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CNOT4O95628 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
CNOT4O95628 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
CNOT4O95628 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
CNOT4O95628 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CNOT4O95628 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
CNOT4O95628 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC13.63□□□□□ -0.23
CNOT4O95628 KRT223P-202ENST00000449164 1292 ntBASIC13.63□□□□□ -0.23
CNOT4O95628 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC13.63□□□□□ -0.23
CNOT4O95628 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CNOT4O95628 PFN2-205ENST00000461868 613 ntTSL 2 BASIC13.63□□□□□ -0.23
CNOT4O95628 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC13.63□□□□□ -0.23
CNOT4O95628 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC13.63□□□□□ -0.23
CNOT4O95628 PTP4A1P2-201ENST00000546033 454 ntBASIC13.63□□□□□ -0.23
CNOT4O95628 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CNOT4O95628 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC13.63□□□□□ -0.23
CNOT4O95628 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC13.63□□□□□ -0.23
CNOT4O95628 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC13.63□□□□□ -0.23
CNOT4O95628 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC13.63□□□□□ -0.23
CNOT4O95628 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC13.63□□□□□ -0.23
CNOT4O95628 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC13.63□□□□□ -0.23
CNOT4O95628 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC13.63□□□□□ -0.23
CNOT4O95628 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC13.63□□□□□ -0.23
CNOT4O95628 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC13.63□□□□□ -0.23
CNOT4O95628 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CNOT4O95628 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC13.63□□□□□ -0.23
CNOT4O95628 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
CNOT4O95628 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CNOT4O95628 AC105250.1-201ENST00000509378 2057 ntBASIC13.63□□□□□ -0.23
CNOT4O95628 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CNOT4O95628 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC13.63□□□□□ -0.23
CNOT4O95628 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CNOT4O95628 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CNOT4O95628 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
CNOT4O95628 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CNOT4O95628 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CNOT4O95628 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC13.63□□□□□ -0.23
CNOT4O95628 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC13.63□□□□□ -0.23
CNOT4O95628 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC13.63□□□□□ -0.23
CNOT4O95628 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CNOT4O95628 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC13.63□□□□□ -0.23
CNOT4O95628 AL138799.1-201ENST00000448213 1675 ntBASIC13.63□□□□□ -0.23
CNOT4O95628 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CNOT4O95628 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
CNOT4O95628 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
CNOT4O95628 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms