Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
SHOX2O60902 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
SHOX2O60902 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC15.29■□□□□ 0.04
SHOX2O60902 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC15.29■□□□□ 0.04
SHOX2O60902 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 DDC-213ENST00000617822 1809 ntTSL 3 BASIC15.29■□□□□ 0.04
SHOX2O60902 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
SHOX2O60902 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
SHOX2O60902 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
SHOX2O60902 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC15.29■□□□□ 0.04
SHOX2O60902 RAB17-203ENST00000409576 466 ntTSL 3 BASIC15.29■□□□□ 0.04
SHOX2O60902 LAGE3P1-201ENST00000425356 484 ntBASIC15.29■□□□□ 0.04
SHOX2O60902 SCARNA2-201ENST00000458748 420 ntBASIC15.29■□□□□ 0.04
SHOX2O60902 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 TPM1-226ENST00000560959 925 ntTSL 2 BASIC15.29■□□□□ 0.04
SHOX2O60902 PRELID1P1-202ENST00000567272 903 ntBASIC15.29■□□□□ 0.04
SHOX2O60902 PNMT-203ENST00000581428 677 ntTSL 2 BASIC15.29■□□□□ 0.04
SHOX2O60902 NT5C-211ENST00000582170 653 ntTSL 3 BASIC15.29■□□□□ 0.04
SHOX2O60902 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
SHOX2O60902 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.29■□□□□ 0.04
SHOX2O60902 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.29■□□□□ 0.04
SHOX2O60902 AL645728.2-202ENST00000641679 227 ntBASIC15.29■□□□□ 0.04
SHOX2O60902 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 EWSAT1-201ENST00000415504 2214 ntTSL 2 BASIC15.29■□□□□ 0.04
SHOX2O60902 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
SHOX2O60902 AC131902.2-201ENST00000566892 2172 ntBASIC15.29■□□□□ 0.04
SHOX2O60902 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
SHOX2O60902 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 COX6B2-210ENST00000593184 2083 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
SHOX2O60902 C8B-201ENST00000371237 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
SHOX2O60902 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHOX2O60902 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC15.28■□□□□ 0.04
SHOX2O60902 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 SH2D3C-201ENST00000314830 3124 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.28■□□□□ 0.04
SHOX2O60902 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.28■□□□□ 0.04
SHOX2O60902 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 AC018665.1-201ENST00000622927 1362 ntBASIC15.28■□□□□ 0.04
SHOX2O60902 LRRC17-201ENST00000249377 2002 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
SHOX2O60902 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
SHOX2O60902 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC15.28■□□□□ 0.04
SHOX2O60902 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
SHOX2O60902 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC15.28■□□□□ 0.04
SHOX2O60902 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC15.28■□□□□ 0.04
SHOX2O60902 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC15.28■□□□□ 0.04
SHOX2O60902 RPS2P1-201ENST00000434010 821 ntBASIC15.28■□□□□ 0.04
SHOX2O60902 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC15.28■□□□□ 0.04
SHOX2O60902 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC15.28■□□□□ 0.04
SHOX2O60902 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 THTPA-204ENST00000554970 569 ntTSL 4 BASIC15.28■□□□□ 0.04
SHOX2O60902 THTPA-206ENST00000556015 535 ntTSL 3 BASIC15.28■□□□□ 0.04
SHOX2O60902 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
SHOX2O60902 PRR29-207ENST00000580752 458 ntTSL 3 BASIC15.28■□□□□ 0.04
SHOX2O60902 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.28■□□□□ 0.04
SHOX2O60902 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC15.28■□□□□ 0.04
SHOX2O60902 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC15.28■□□□□ 0.04
SHOX2O60902 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC15.28■□□□□ 0.04
SHOX2O60902 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC15.28■□□□□ 0.04
SHOX2O60902 AC012313.10-201ENST00000623509 926 ntBASIC15.28■□□□□ 0.04
SHOX2O60902 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC15.28■□□□□ 0.04
SHOX2O60902 SPTSSB-201ENST00000359175 3103 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC15.28■□□□□ 0.04
SHOX2O60902 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms