Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC12.37□□□□□ -0.43
HMGB3O15347 QPRT-203ENST00000562473 579 ntTSL 3 BASIC12.37□□□□□ -0.43
HMGB3O15347 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC12.37□□□□□ -0.43
HMGB3O15347 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC12.37□□□□□ -0.43
HMGB3O15347 ACTL9-202ENST00000612068 1252 ntBASIC12.37□□□□□ -0.43
HMGB3O15347 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC12.37□□□□□ -0.43
HMGB3O15347 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC12.37□□□□□ -0.43
HMGB3O15347 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC12.37□□□□□ -0.43
HMGB3O15347 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC12.37□□□□□ -0.43
HMGB3O15347 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 CACNA1F-202ENST00000376251 5813 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC12.37□□□□□ -0.43
HMGB3O15347 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC12.37□□□□□ -0.43
HMGB3O15347 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
HMGB3O15347 HDGFL3-201ENST00000299633 12733 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 C15orf40-201ENST00000304177 11244 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 XIRP1-202ENST00000396251 6040 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 KCND2-201ENST00000331113 5331 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC12.37□□□□□ -0.43
HMGB3O15347 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC12.37□□□□□ -0.43
HMGB3O15347 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
HMGB3O15347 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 UNC13B-206ENST00000617908 6432 ntTSL 5 BASIC12.37□□□□□ -0.43
HMGB3O15347 UNC13B-207ENST00000619578 6426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC12.36□□□□□ -0.43
HMGB3O15347 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 ARSD-202ENST00000381154 5159 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 TRAK1-210ENST00000613405 4672 ntTSL 2 BASIC12.36□□□□□ -0.43
HMGB3O15347 ZFC3H1-201ENST00000378743 7285 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 CEP68-201ENST00000260569 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 AC073439.1-201ENST00000624121 1774 ntBASIC12.36□□□□□ -0.43
HMGB3O15347 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC12.36□□□□□ -0.43
HMGB3O15347 C10orf105-201ENST00000398786 4730 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
HMGB3O15347 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
HMGB3O15347 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
HMGB3O15347 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC12.36□□□□□ -0.43
HMGB3O15347 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC12.36□□□□□ -0.43
HMGB3O15347 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC12.36□□□□□ -0.43
HMGB3O15347 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC12.36□□□□□ -0.43
HMGB3O15347 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
HMGB3O15347 NPLOC4-202ENST00000374747 5538 ntTSL 2 BASIC12.36□□□□□ -0.43
HMGB3O15347 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 TMPOP1-202ENST00000424642 1267 ntBASIC12.36□□□□□ -0.43
HMGB3O15347 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC12.36□□□□□ -0.43
HMGB3O15347 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
HMGB3O15347 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 RIN3-211ENST00000557762 517 ntTSL 3 BASIC12.36□□□□□ -0.43
HMGB3O15347 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC12.36□□□□□ -0.43
HMGB3O15347 PAM16-208ENST00000573553 722 ntTSL 2 BASIC12.36□□□□□ -0.43
HMGB3O15347 NPAP1P7-201ENST00000613027 823 ntBASIC12.36□□□□□ -0.43
HMGB3O15347 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC12.36□□□□□ -0.43
HMGB3O15347 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
HMGB3O15347 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC12.36□□□□□ -0.43
HMGB3O15347 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC12.36□□□□□ -0.43
HMGB3O15347 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
HMGB3O15347 RGS8-201ENST00000258302 5606 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC12.36□□□□□ -0.43
HMGB3O15347 REXO1L1P-202ENST00000608646 1974 ntBASIC12.36□□□□□ -0.43
HMGB3O15347 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HMGB3O15347 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HMGB3O15347 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HMGB3O15347 SCN4A-201ENST00000435607 7805 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HMGB3O15347 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HMGB3O15347 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HMGB3O15347 MORC2-202ENST00000397641 5181 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
HMGB3O15347 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
HMGB3O15347 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HMGB3O15347 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
HMGB3O15347 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HMGB3O15347 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms