Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
LIMA1Q9UHB6 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIMA1Q9UHB6 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC16.69■□□□□ 0.26
LIMA1Q9UHB6 AL354702.1-201ENST00000442006 1960 ntBASIC16.69■□□□□ 0.26
LIMA1Q9UHB6 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIMA1Q9UHB6 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
LIMA1Q9UHB6 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIMA1Q9UHB6 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
LIMA1Q9UHB6 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC16.69■□□□□ 0.26
LIMA1Q9UHB6 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIMA1Q9UHB6 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIMA1Q9UHB6 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC16.69■□□□□ 0.26
LIMA1Q9UHB6 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIMA1Q9UHB6 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC16.69■□□□□ 0.26
LIMA1Q9UHB6 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 BANP-203ENST00000393207 2438 ntTSL 2 BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 R3HDM2P2-201ENST00000401880 2116 ntBASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 TSEN15P1-201ENST00000423257 515 ntBASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 AL596442.2-201ENST00000610240 980 ntBASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 AC055811.4-201ENST00000624039 1754 ntBASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIMA1Q9UHB6 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 AC023090.2-201ENST00000625182 2110 ntBASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 AL928921.2-201ENST00000641325 2442 ntBASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 AC004967.1-201ENST00000453589 447 ntBASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms