Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
SIX2Q9NPC8 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
SIX2Q9NPC8 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
SIX2Q9NPC8 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SIX2Q9NPC8 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SIX2Q9NPC8 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SIX2Q9NPC8 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
SIX2Q9NPC8 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
SIX2Q9NPC8 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
SIX2Q9NPC8 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 BRF1-202ENST00000379932 884 ntTSL 5 BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 EIF3FP3-201ENST00000434851 1086 ntBASIC16.33■□□□□ 0.2
SIX2Q9NPC8 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 ELK1P1-201ENST00000485699 580 ntBASIC16.33■□□□□ 0.2
SIX2Q9NPC8 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 AC104596.2-201ENST00000512793 793 ntBASIC16.33■□□□□ 0.2
SIX2Q9NPC8 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 RN7SL204P-201ENST00000582831 262 ntBASIC16.33■□□□□ 0.2
SIX2Q9NPC8 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX2Q9NPC8 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 AC026434.2-201ENST00000506094 1078 ntBASIC16.32■□□□□ 0.2
SIX2Q9NPC8 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 MPI-203ENST00000535694 1523 ntTSL 2 BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 CTBP2P3-201ENST00000585629 1255 ntBASIC16.32■□□□□ 0.2
SIX2Q9NPC8 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 LINC02560-201ENST00000596379 459 ntBASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms