Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 DOC2GP-202ENST00000514950 1163 ntBASIC15.81■□□□□ 0.12
PCDH9Q9HC56 FTH1-202ENST00000526640 786 ntTSL 2 BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 TDG-209ENST00000544861 1387 ntTSL 2 BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 AC004790.1-201ENST00000612686 536 ntBASIC15.81■□□□□ 0.12
PCDH9Q9HC56 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC15.81■□□□□ 0.12
PCDH9Q9HC56 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 MTHFR-210ENST00000641407 2387 ntBASIC15.8■□□□□ 0.12
PCDH9Q9HC56 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 AC007787.1-201ENST00000588095 1583 ntBASIC15.8■□□□□ 0.12
PCDH9Q9HC56 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 MPI-203ENST00000535694 1523 ntTSL 2 BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 SPDYE19P-201ENST00000338590 713 ntBASIC15.8■□□□□ 0.12
PCDH9Q9HC56 PKIG-203ENST00000372887 769 ntTSL 3 BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 FAM207CP-201ENST00000443486 507 ntBASIC15.8■□□□□ 0.12
PCDH9Q9HC56 SERBP1P5-201ENST00000510079 1181 ntBASIC15.8■□□□□ 0.12
PCDH9Q9HC56 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 GPR39-203ENST00000622084 900 ntTSL 5 BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH9Q9HC56 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 GNAQP1-201ENST00000444815 1067 ntBASIC15.79■□□□□ 0.12
PCDH9Q9HC56 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 SPTLC1P1-201ENST00000447199 261 ntBASIC15.79■□□□□ 0.12
PCDH9Q9HC56 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC15.79■□□□□ 0.12
PCDH9Q9HC56 TPRX2P-201ENST00000535362 881 ntBASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms