Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
MMP28Q9H239 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
MMP28Q9H239 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MMP28Q9H239 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
MMP28Q9H239 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
MMP28Q9H239 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
MMP28Q9H239 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC13.6□□□□□ -0.23
MMP28Q9H239 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
MMP28Q9H239 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
MMP28Q9H239 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC13.6□□□□□ -0.23
MMP28Q9H239 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
MMP28Q9H239 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC13.6□□□□□ -0.23
MMP28Q9H239 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
MMP28Q9H239 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
MMP28Q9H239 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
MMP28Q9H239 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
MMP28Q9H239 DPM2-202ENST00000373110 738 ntTSL 2 BASIC13.6□□□□□ -0.23
MMP28Q9H239 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
MMP28Q9H239 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
MMP28Q9H239 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
MMP28Q9H239 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
MMP28Q9H239 DDT-204ENST00000404092 805 ntTSL 3 BASIC13.6□□□□□ -0.23
MMP28Q9H239 HMGA1P7-201ENST00000406908 502 ntBASIC13.6□□□□□ -0.23
MMP28Q9H239 HNRNPA1P28-201ENST00000424481 961 ntBASIC13.6□□□□□ -0.23
MMP28Q9H239 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC13.6□□□□□ -0.23
MMP28Q9H239 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
MMP28Q9H239 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
MMP28Q9H239 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC13.6□□□□□ -0.23
MMP28Q9H239 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
MMP28Q9H239 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC13.6□□□□□ -0.23
MMP28Q9H239 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC13.6□□□□□ -0.23
MMP28Q9H239 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC13.6□□□□□ -0.23
MMP28Q9H239 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC13.6□□□□□ -0.23
MMP28Q9H239 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC13.6□□□□□ -0.23
MMP28Q9H239 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
MMP28Q9H239 AL031055.1-201ENST00000606362 631 ntBASIC13.6□□□□□ -0.23
MMP28Q9H239 AC004877.2-201ENST00000623941 599 ntBASIC13.6□□□□□ -0.23
MMP28Q9H239 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
MMP28Q9H239 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
MMP28Q9H239 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
MMP28Q9H239 LRRFIP1P1-201ENST00000498774 2246 ntBASIC13.6□□□□□ -0.23
MMP28Q9H239 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
MMP28Q9H239 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
MMP28Q9H239 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.6□□□□□ -0.23
MMP28Q9H239 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
MMP28Q9H239 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
MMP28Q9H239 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC13.6□□□□□ -0.23
MMP28Q9H239 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC13.59□□□□□ -0.23
MMP28Q9H239 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC13.59□□□□□ -0.23
MMP28Q9H239 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC13.59□□□□□ -0.23
MMP28Q9H239 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
MMP28Q9H239 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
MMP28Q9H239 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
MMP28Q9H239 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC13.59□□□□□ -0.23
MMP28Q9H239 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
MMP28Q9H239 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC13.59□□□□□ -0.23
MMP28Q9H239 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
MMP28Q9H239 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
MMP28Q9H239 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
MMP28Q9H239 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
MMP28Q9H239 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC13.59□□□□□ -0.23
MMP28Q9H239 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC13.59□□□□□ -0.23
MMP28Q9H239 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
MMP28Q9H239 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
MMP28Q9H239 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
MMP28Q9H239 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
MMP28Q9H239 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
MMP28Q9H239 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
MMP28Q9H239 WASH6P-202ENST00000359512 1437 ntBASIC13.59□□□□□ -0.23
MMP28Q9H239 AC025580.3-201ENST00000617932 1424 ntBASIC13.59□□□□□ -0.23
MMP28Q9H239 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
MMP28Q9H239 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
MMP28Q9H239 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC13.59□□□□□ -0.23
MMP28Q9H239 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
MMP28Q9H239 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
MMP28Q9H239 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC13.59□□□□□ -0.23
MMP28Q9H239 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC13.59□□□□□ -0.23
MMP28Q9H239 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
MMP28Q9H239 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
MMP28Q9H239 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
MMP28Q9H239 RNU1-129P-201ENST00000384064 167 ntBASIC13.59□□□□□ -0.23
MMP28Q9H239 PMP22-202ENST00000395936 816 ntTSL 3 BASIC13.59□□□□□ -0.23
MMP28Q9H239 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
MMP28Q9H239 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
MMP28Q9H239 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
MMP28Q9H239 FALEC-201ENST00000416894 566 ntTSL 3 BASIC13.59□□□□□ -0.23
MMP28Q9H239 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC13.59□□□□□ -0.23
MMP28Q9H239 KRT18P2-201ENST00000447938 1258 ntBASIC13.59□□□□□ -0.23
MMP28Q9H239 SMN2-210ENST00000511812 867 ntTSL 2 BASIC13.59□□□□□ -0.23
MMP28Q9H239 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
MMP28Q9H239 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC13.59□□□□□ -0.23
MMP28Q9H239 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
MMP28Q9H239 KRT19P2-202ENST00000557173 1012 ntBASIC13.59□□□□□ -0.23
MMP28Q9H239 AC002347.1-201ENST00000569543 541 ntBASIC13.59□□□□□ -0.23
MMP28Q9H239 MIR3909-201ENST00000579518 119 ntBASIC13.59□□□□□ -0.23
MMP28Q9H239 U1.21-201ENST00000580816 167 ntBASIC13.59□□□□□ -0.23
MMP28Q9H239 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC13.59□□□□□ -0.23
MMP28Q9H239 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms