Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 EIF5AP2-201ENST00000585668 1047 ntBASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 SIGLEC18P-201ENST00000602271 909 ntBASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 RNF146-211ENST00000609447 607 ntTSL 4 BASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 LINC01783-202ENST00000614408 828 ntBASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 BX284668.2-205ENST00000619677 828 ntBASIC19.17■□□□□ 0.66
SHANK3Q9BYB0 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 AL118508.1-201ENST00000613502 2345 ntBASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 HNRNPA1P27-201ENST00000412087 955 ntBASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 LYPLA2P1-203ENST00000447689 696 ntBASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 AC114947.1-202ENST00000514136 344 ntBASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 AL132780.4-201ENST00000624870 1135 ntBASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC19.16■□□□□ 0.66
SHANK3Q9BYB0 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 HPGD-203ENST00000422112 805 ntTSL 2 BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 AC092580.1-201ENST00000433998 658 ntBASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 AC093752.3-201ENST00000567343 901 ntBASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 MIR6769A-201ENST00000617340 73 ntBASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK3Q9BYB0 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
SHANK3Q9BYB0 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC19.14■□□□□ 0.66
SHANK3Q9BYB0 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
SHANK3Q9BYB0 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SHANK3Q9BYB0 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SHANK3Q9BYB0 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC19.14■□□□□ 0.66
SHANK3Q9BYB0 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC19.14■□□□□ 0.66
SHANK3Q9BYB0 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC19.14■□□□□ 0.66
SHANK3Q9BYB0 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC19.14■□□□□ 0.66
SHANK3Q9BYB0 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC19.14■□□□□ 0.66
SHANK3Q9BYB0 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
SHANK3Q9BYB0 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
SHANK3Q9BYB0 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms