Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC099336.1-201ENST00000417053 1171 ntBASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 POM121L8P-201ENST00000417732 1281 ntBASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 FAM8A4P-201ENST00000435433 1213 ntBASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 POM121L9P-203ENST00000441984 1285 ntBASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 AC103702.1-201ENST00000548801 2630 ntBASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 TUBB1P2-201ENST00000422712 1306 ntBASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 TUBB1P1-201ENST00000503144 1300 ntBASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 LILRP1-201ENST00000444199 1370 ntBASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 AC105917.1-201ENST00000506637 2539 ntBASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 LCK-206ENST00000373564 2137 ntTSL 5 BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 TLE1P1-201ENST00000422965 589 ntBASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 MIR4259-201ENST00000584466 101 ntBASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 HYMAI-201ENST00000635591 3347 ntBASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4AQ9BY43 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 AL122018.1-201ENST00000446607 2310 ntBASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 TPO-206ENST00000382269 1155 ntTSL 5 BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 AC026954.1-201ENST00000429771 1293 ntBASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms