Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC13.03□□□□□ -0.32
COL12A1Q99715 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
COL12A1Q99715 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC13.03□□□□□ -0.32
COL12A1Q99715 STX3-207ENST00000633708 3111 ntTSL 5 BASIC13.03□□□□□ -0.32
COL12A1Q99715 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 BAX-205ENST00000391871 687 ntTSL 5 BASIC13.03□□□□□ -0.32
COL12A1Q99715 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 IGHV3-43-201ENST00000434710 434 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
COL12A1Q99715 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC13.03□□□□□ -0.32
COL12A1Q99715 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC13.03□□□□□ -0.32
COL12A1Q99715 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC13.03□□□□□ -0.32
COL12A1Q99715 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
COL12A1Q99715 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 AGGF1P2-201ENST00000426656 2106 ntBASIC13.03□□□□□ -0.32
COL12A1Q99715 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC13.03□□□□□ -0.32
COL12A1Q99715 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL12A1Q99715 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC13.03□□□□□ -0.32
COL12A1Q99715 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
COL12A1Q99715 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC13.02□□□□□ -0.32
COL12A1Q99715 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC13.02□□□□□ -0.32
COL12A1Q99715 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC13.02□□□□□ -0.32
COL12A1Q99715 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
COL12A1Q99715 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
COL12A1Q99715 CASP2-203ENST00000392925 616 ntTSL 3 BASIC13.02□□□□□ -0.32
COL12A1Q99715 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL12A1Q99715 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC13.02□□□□□ -0.32
COL12A1Q99715 FTH1P22-201ENST00000456305 520 ntBASIC13.02□□□□□ -0.32
COL12A1Q99715 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC13.02□□□□□ -0.32
COL12A1Q99715 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL12A1Q99715 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
COL12A1Q99715 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC13.02□□□□□ -0.32
COL12A1Q99715 AC007952.4-201ENST00000573866 637 ntBASIC13.02□□□□□ -0.32
COL12A1Q99715 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC13.02□□□□□ -0.32
COL12A1Q99715 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC13.02□□□□□ -0.32
COL12A1Q99715 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC13.02□□□□□ -0.32
COL12A1Q99715 AC110057.1-201ENST00000636031 898 ntBASIC13.02□□□□□ -0.32
COL12A1Q99715 AL137783.1-201ENST00000623494 1896 ntBASIC13.02□□□□□ -0.32
COL12A1Q99715 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC13.02□□□□□ -0.32
COL12A1Q99715 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL12A1Q99715 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
COL12A1Q99715 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
COL12A1Q99715 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
COL12A1Q99715 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC13.02□□□□□ -0.32
COL12A1Q99715 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL12A1Q99715 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL12A1Q99715 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL12A1Q99715 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL12A1Q99715 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL12A1Q99715 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC13.02□□□□□ -0.33
COL12A1Q99715 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL12A1Q99715 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL12A1Q99715 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
COL12A1Q99715 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC13.02□□□□□ -0.33
COL12A1Q99715 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL12A1Q99715 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC13.02□□□□□ -0.33
COL12A1Q99715 AC254633.1-201ENST00000606790 345 ntBASIC13.02□□□□□ -0.33
COL12A1Q99715 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL12A1Q99715 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL12A1Q99715 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC13.02□□□□□ -0.33
COL12A1Q99715 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL12A1Q99715 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC13.02□□□□□ -0.33
COL12A1Q99715 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
COL12A1Q99715 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL12A1Q99715 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL12A1Q99715 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.02□□□□□ -0.33
COL12A1Q99715 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL12A1Q99715 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL12A1Q99715 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL12A1Q99715 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
COL12A1Q99715 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL12A1Q99715 SURF4-203ENST00000371991 715 ntTSL 3 BASIC13.02□□□□□ -0.33
COL12A1Q99715 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC13.02□□□□□ -0.33
COL12A1Q99715 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL12A1Q99715 DUTP3-201ENST00000450025 415 ntBASIC13.02□□□□□ -0.33
COL12A1Q99715 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC13.02□□□□□ -0.33
COL12A1Q99715 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC13.02□□□□□ -0.33
COL12A1Q99715 AC097381.2-201ENST00000510640 859 ntTSL 2 BASIC13.02□□□□□ -0.33
COL12A1Q99715 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC13.02□□□□□ -0.33
COL12A1Q99715 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC13.02□□□□□ -0.33
COL12A1Q99715 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC13.01□□□□□ -0.33
COL12A1Q99715 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL12A1Q99715 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
COL12A1Q99715 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL12A1Q99715 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC13.01□□□□□ -0.33
COL12A1Q99715 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL12A1Q99715 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC13.01□□□□□ -0.33
COL12A1Q99715 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
COL12A1Q99715 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL12A1Q99715 PLA2G2A-201ENST00000375111 970 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms