Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
SKA3Q8IX90 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC13.6□□□□□ -0.23
SKA3Q8IX90 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 CICP11-201ENST00000434745 2827 ntBASIC13.6□□□□□ -0.23
SKA3Q8IX90 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC13.6□□□□□ -0.23
SKA3Q8IX90 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 AC005252.3-201ENST00000623855 2258 ntBASIC13.6□□□□□ -0.23
SKA3Q8IX90 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
SKA3Q8IX90 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC13.6□□□□□ -0.23
SKA3Q8IX90 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC13.6□□□□□ -0.23
SKA3Q8IX90 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC13.6□□□□□ -0.23
SKA3Q8IX90 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
SKA3Q8IX90 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
SKA3Q8IX90 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 GOLGA6L11P-201ENST00000417252 1298 ntBASIC13.6□□□□□ -0.23
SKA3Q8IX90 PFN2-205ENST00000461868 613 ntTSL 2 BASIC13.6□□□□□ -0.23
SKA3Q8IX90 FADS2-205ENST00000517839 469 ntTSL 3 BASIC13.6□□□□□ -0.23
SKA3Q8IX90 AC055876.2-201ENST00000531834 546 ntBASIC13.6□□□□□ -0.23
SKA3Q8IX90 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC13.6□□□□□ -0.23
SKA3Q8IX90 RRP7BP-205ENST00000566851 833 ntBASIC13.6□□□□□ -0.23
SKA3Q8IX90 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC13.6□□□□□ -0.23
SKA3Q8IX90 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC13.6□□□□□ -0.23
SKA3Q8IX90 MIR8072-201ENST00000614241 80 ntBASIC13.6□□□□□ -0.23
SKA3Q8IX90 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
SKA3Q8IX90 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC13.6□□□□□ -0.23
SKA3Q8IX90 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC13.6□□□□□ -0.23
SKA3Q8IX90 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 AC148477.4-201ENST00000613430 1793 ntBASIC13.6□□□□□ -0.23
SKA3Q8IX90 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
SKA3Q8IX90 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
SKA3Q8IX90 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
SKA3Q8IX90 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC13.6□□□□□ -0.23
SKA3Q8IX90 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
SKA3Q8IX90 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
SKA3Q8IX90 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
SKA3Q8IX90 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SKA3Q8IX90 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC13.59□□□□□ -0.23
SKA3Q8IX90 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SKA3Q8IX90 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC13.59□□□□□ -0.23
SKA3Q8IX90 AC126365.1-201ENST00000578585 1514 ntBASIC13.59□□□□□ -0.23
SKA3Q8IX90 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC13.59□□□□□ -0.23
SKA3Q8IX90 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
SKA3Q8IX90 AC006486.2-201ENST00000624246 2199 ntBASIC13.59□□□□□ -0.23
SKA3Q8IX90 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SKA3Q8IX90 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SKA3Q8IX90 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SKA3Q8IX90 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC13.59□□□□□ -0.23
SKA3Q8IX90 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SKA3Q8IX90 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SKA3Q8IX90 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
SKA3Q8IX90 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SKA3Q8IX90 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
SKA3Q8IX90 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SKA3Q8IX90 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SKA3Q8IX90 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
SKA3Q8IX90 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
SKA3Q8IX90 CELP-203ENST00000624767 2414 ntTSL 5 BASIC13.59□□□□□ -0.23
SKA3Q8IX90 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
SKA3Q8IX90 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC13.59□□□□□ -0.23
SKA3Q8IX90 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SKA3Q8IX90 AL353779.1-201ENST00000434793 351 ntBASIC13.59□□□□□ -0.23
SKA3Q8IX90 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC13.59□□□□□ -0.23
SKA3Q8IX90 CHCHD2P3-201ENST00000603038 451 ntBASIC13.59□□□□□ -0.23
SKA3Q8IX90 AC099568.2-201ENST00000609194 695 ntBASIC13.59□□□□□ -0.23
SKA3Q8IX90 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC13.59□□□□□ -0.23
SKA3Q8IX90 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SKA3Q8IX90 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SKA3Q8IX90 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SKA3Q8IX90 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
SKA3Q8IX90 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
SKA3Q8IX90 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SKA3Q8IX90 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SKA3Q8IX90 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC13.59□□□□□ -0.23
SKA3Q8IX90 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SKA3Q8IX90 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SKA3Q8IX90 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
SKA3Q8IX90 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC13.59□□□□□ -0.23
SKA3Q8IX90 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC13.59□□□□□ -0.23
SKA3Q8IX90 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC13.59□□□□□ -0.23
SKA3Q8IX90 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms