Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 ZFYVE27-205ENST00000370613 2669 ntTSL 2 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 CARS-AS1-201ENST00000499962 2664 ntTSL 2 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 TUBGCP2-210ENST00000543663 4302 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 PASK-203ENST00000403638 5161 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 ANKRD36-204ENST00000461153 6102 ntAPPRIS P2 TSL 5 BASIC9.47□□□□□ -0.89
LINC00643Q86TS7 SEZ6L-201ENST00000248933 3248 ntAPPRIS P3 TSL 1 (best) BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 SEZ6L-210ENST00000629590 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 DNMT1-201ENST00000340748 5408 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 AMDHD2-202ENST00000302956 3273 ntTSL 1 (best) BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 HECW1-201ENST00000395891 9501 ntAPPRIS P3 TSL 1 (best) BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 GATC-203ENST00000551765 4244 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 OTOG-202ENST00000399391 8778 ntAPPRIS ALT2 TSL 5 BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 CYP4F11-205ENST00000620614 2908 ntTSL 5 BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 MVK-214ENST00000629016 1591 ntTSL 5 BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 DENND3-221ENST00000523308 2959 ntTSL 2 BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 TCF4-248ENST00000616053 8140 ntTSL 5 BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 GPR161-209ENST00000539777 7655 ntTSL 2 BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 KLC2-206ENST00000417856 3015 ntAPPRIS P1 TSL 5 BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 BCL2L13-202ENST00000337612 4905 ntTSL 2 BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 GNAS-214ENST00000371100 4029 ntTSL 5 BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 MARCH3-201ENST00000308660 4196 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 C12orf76-205ENST00000548191 2204 ntAPPRIS P1 TSL 2 BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 ATG5-202ENST00000360666 2712 ntTSL 1 (best) BASIC9.46□□□□□ -0.89
LINC00643Q86TS7 DNAJC14-202ENST00000317287 2774 ntAPPRIS P1 TSL 2 BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 PDZRN3-208ENST00000479530 2778 ntTSL 2 BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 RPL5P21-201ENST00000404620 815 ntBASIC9.46□□□□□ -0.9
LINC00643Q86TS7 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 AC007967.3-201ENST00000434308 558 ntBASIC9.46□□□□□ -0.9
LINC00643Q86TS7 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 SEC1P-202ENST00000473944 940 ntBASIC9.46□□□□□ -0.9
LINC00643Q86TS7 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 AC060766.5-201ENST00000590539 871 ntBASIC9.46□□□□□ -0.9
LINC00643Q86TS7 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 SPTSSB-204ENST00000617024 1292 ntBASIC9.46□□□□□ -0.9
LINC00643Q86TS7 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 GUCY1B3-204ENST00000505154 2316 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 POPDC2-208ENST00000493094 1837 ntAPPRIS P1 TSL 5 BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 ASB7-201ENST00000332783 4985 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 AMBRA1-212ENST00000534300 5067 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 BTBD3-204ENST00000405977 5137 ntAPPRIS P4 TSL 5 BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 DAPK1-201ENST00000358077 5743 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 TJP2-206ENST00000453658 4129 ntAPPRIS ALT2 TSL 2 BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 RRBP1-206ENST00000455029 2485 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 PTGR2-204ENST00000555228 2543 ntAPPRIS P1 TSL 5 BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 XIRP1-201ENST00000340369 6460 ntAPPRIS P3 TSL 1 (best) BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 MADD-204ENST00000395336 5942 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 PER1-202ENST00000354903 3115 ntTSL 2 BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 CELF1-204ENST00000395290 7666 ntAPPRIS ALT1 TSL 2 BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 FOS-202ENST00000535987 1402 ntTSL 2 BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 CACNB1-202ENST00000394303 3742 ntAPPRIS P3 TSL 1 (best) BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 AL353593.2-201ENST00000602529 1483 ntBASIC9.46□□□□□ -0.9
LINC00643Q86TS7 DOCK4-204ENST00000428084 7997 ntAPPRIS ALT2 TSL 5 BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 UBN1-202ENST00000396658 6336 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 NRP2-202ENST00000357118 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 ADCY4-202ENST00000418030 3353 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 COL12A1-202ENST00000345356 5886 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 CT62-203ENST00000566432 2822 ntAPPRIS ALT2 TSL 2 BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 AC008620.2-201ENST00000510294 1569 ntBASIC9.46□□□□□ -0.9
LINC00643Q86TS7 TNFAIP3-206ENST00000612899 4735 ntAPPRIS P1 TSL 5 BASIC9.46□□□□□ -0.9
LINC00643Q86TS7 RGS6-203ENST00000402788 5400 ntTSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 TP73-201ENST00000346387 4854 ntTSL 5 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 ENOX1-201ENST00000261488 2982 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 SF1-209ENST00000433274 2317 ntTSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 AL390066.1-201ENST00000456414 2302 ntTSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 TRIM3-203ENST00000525074 3044 ntAPPRIS P1 TSL 2 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 VWA5B1-201ENST00000289815 4475 ntAPPRIS ALT2 TSL 5 BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
LINC00643Q86TS7 TPO-202ENST00000345913 3145 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms