Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 AC114947.1-202ENST00000514136 344 ntBASIC15.69■□□□□ 0.1
CHD9Q3L8U1 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 MIR4472-1-201ENST00000584349 80 ntBASIC15.69■□□□□ 0.1
CHD9Q3L8U1 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CHD9Q3L8U1 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.68■□□□□ 0.1
CHD9Q3L8U1 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 AL513523.2-202ENST00000427283 2040 ntBASIC15.68■□□□□ 0.1
CHD9Q3L8U1 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 AC092299.1-201ENST00000632679 757 ntBASIC15.68■□□□□ 0.1
CHD9Q3L8U1 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 PTPN20CP-201ENST00000614090 920 ntBASIC15.68■□□□□ 0.1
CHD9Q3L8U1 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHD9Q3L8U1 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CHD9Q3L8U1 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
CHD9Q3L8U1 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CHD9Q3L8U1 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CHD9Q3L8U1 TMBIM7P-202ENST00000641474 1516 ntBASIC15.67■□□□□ 0.1
CHD9Q3L8U1 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC15.67■□□□□ 0.1
CHD9Q3L8U1 PGAM1P12-201ENST00000505622 748 ntBASIC15.67■□□□□ 0.1
CHD9Q3L8U1 ALG3P1-201ENST00000508806 1114 ntBASIC15.67■□□□□ 0.1
CHD9Q3L8U1 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC15.67■□□□□ 0.1
CHD9Q3L8U1 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC15.67■□□□□ 0.1
CHD9Q3L8U1 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CHD9Q3L8U1 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.67■□□□□ 0.1
CHD9Q3L8U1 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC15.67■□□□□ 0.1
CHD9Q3L8U1 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
CHD9Q3L8U1 AC004554.1-201ENST00000422830 1468 ntBASIC15.67■□□□□ 0.1
CHD9Q3L8U1 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CHD9Q3L8U1 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.67■□□□□ 0.1
CHD9Q3L8U1 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC15.67■□□□□ 0.1
CHD9Q3L8U1 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC15.67■□□□□ 0.1
CHD9Q3L8U1 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CHD9Q3L8U1 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CHD9Q3L8U1 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CHD9Q3L8U1 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.67■□□□□ 0.1
CHD9Q3L8U1 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CHD9Q3L8U1 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms