Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC13.82□□□□□ -0.2
SUMO3P55854 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC13.82□□□□□ -0.2
SUMO3P55854 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC13.82□□□□□ -0.2
SUMO3P55854 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC13.82□□□□□ -0.2
SUMO3P55854 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
SUMO3P55854 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC13.81□□□□□ -0.2
SUMO3P55854 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
SUMO3P55854 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.81□□□□□ -0.2
SUMO3P55854 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC13.81□□□□□ -0.2
SUMO3P55854 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SUMO3P55854 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC13.81□□□□□ -0.2
SUMO3P55854 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SUMO3P55854 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SUMO3P55854 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SUMO3P55854 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC13.81□□□□□ -0.2
SUMO3P55854 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SUMO3P55854 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC13.81□□□□□ -0.2
SUMO3P55854 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
SUMO3P55854 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SUMO3P55854 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
SUMO3P55854 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SUMO3P55854 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SUMO3P55854 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC13.81□□□□□ -0.2
SUMO3P55854 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC13.81□□□□□ -0.2
SUMO3P55854 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SUMO3P55854 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
SUMO3P55854 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SUMO3P55854 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC13.81□□□□□ -0.2
SUMO3P55854 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
SUMO3P55854 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC13.81□□□□□ -0.2
SUMO3P55854 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
SUMO3P55854 AL035633.1-201ENST00000406139 838 ntBASIC13.81□□□□□ -0.2
SUMO3P55854 AL512384.1-201ENST00000406683 331 ntBASIC13.81□□□□□ -0.2
SUMO3P55854 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
SUMO3P55854 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC13.81□□□□□ -0.2
SUMO3P55854 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC13.81□□□□□ -0.2
SUMO3P55854 AL355864.2-201ENST00000447420 863 ntBASIC13.81□□□□□ -0.2
SUMO3P55854 COX20P2-201ENST00000452636 358 ntBASIC13.81□□□□□ -0.2
SUMO3P55854 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
SUMO3P55854 AP005018.1-201ENST00000525475 301 ntBASIC13.81□□□□□ -0.2
SUMO3P55854 RPSAP52-203ENST00000622976 1023 ntBASIC13.81□□□□□ -0.2
SUMO3P55854 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC13.81□□□□□ -0.2
SUMO3P55854 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
SUMO3P55854 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SUMO3P55854 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SUMO3P55854 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC13.81□□□□□ -0.2
SUMO3P55854 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC13.81□□□□□ -0.2
SUMO3P55854 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
SUMO3P55854 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC13.81□□□□□ -0.2
SUMO3P55854 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC13.81□□□□□ -0.2
SUMO3P55854 AC134312.5-201ENST00000568031 1313 ntBASIC13.81□□□□□ -0.2
SUMO3P55854 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
SUMO3P55854 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC13.81□□□□□ -0.2
SUMO3P55854 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC13.81□□□□□ -0.2
SUMO3P55854 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SUMO3P55854 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SUMO3P55854 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
SUMO3P55854 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13.81□□□□□ -0.2
SUMO3P55854 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
SUMO3P55854 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SUMO3P55854 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
SUMO3P55854 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SUMO3P55854 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SUMO3P55854 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
SUMO3P55854 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SUMO3P55854 AL137783.1-201ENST00000623494 1896 ntBASIC13.8□□□□□ -0.2
SUMO3P55854 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SUMO3P55854 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
SUMO3P55854 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SUMO3P55854 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SUMO3P55854 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SUMO3P55854 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
SUMO3P55854 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SUMO3P55854 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SUMO3P55854 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SUMO3P55854 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SUMO3P55854 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SUMO3P55854 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SUMO3P55854 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SUMO3P55854 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SUMO3P55854 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC13.8□□□□□ -0.2
SUMO3P55854 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
SUMO3P55854 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC13.8□□□□□ -0.2
SUMO3P55854 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
SUMO3P55854 EDF1-203ENST00000371649 790 ntTSL 2 BASIC13.8□□□□□ -0.2
SUMO3P55854 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SUMO3P55854 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms