Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC12.61□□□□□ -0.39
CDX1P47902 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
CDX1P47902 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 RELA-227ENST00000615805 2236 ntTSL 5 BASIC12.61□□□□□ -0.39
CDX1P47902 SRC-202ENST00000373558 4304 ntTSL 5 BASIC12.61□□□□□ -0.39
CDX1P47902 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CDX1P47902 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
CDX1P47902 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
CDX1P47902 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC12.6□□□□□ -0.39
CDX1P47902 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC12.6□□□□□ -0.39
CDX1P47902 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC12.6□□□□□ -0.39
CDX1P47902 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC12.6□□□□□ -0.39
CDX1P47902 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC12.6□□□□□ -0.39
CDX1P47902 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
CDX1P47902 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
CDX1P47902 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 RPS19-201ENST00000221975 500 ntTSL 3 BASIC12.6□□□□□ -0.39
CDX1P47902 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC12.6□□□□□ -0.39
CDX1P47902 AC092580.3-201ENST00000430932 139 ntBASIC12.6□□□□□ -0.39
CDX1P47902 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
CDX1P47902 SATB1-217ENST00000493952 626 ntTSL 3 BASIC12.6□□□□□ -0.39
CDX1P47902 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC12.6□□□□□ -0.39
CDX1P47902 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC12.6□□□□□ -0.39
CDX1P47902 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC12.6□□□□□ -0.39
CDX1P47902 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
CDX1P47902 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC12.6□□□□□ -0.39
CDX1P47902 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC12.6□□□□□ -0.39
CDX1P47902 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC12.6□□□□□ -0.39
CDX1P47902 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC12.6□□□□□ -0.39
CDX1P47902 AL390754.1-201ENST00000619088 582 ntBASIC12.6□□□□□ -0.39
CDX1P47902 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC12.6□□□□□ -0.39
CDX1P47902 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC12.6□□□□□ -0.39
CDX1P47902 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC12.6□□□□□ -0.39
CDX1P47902 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC12.6□□□□□ -0.39
CDX1P47902 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
CDX1P47902 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
CDX1P47902 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC12.6□□□□□ -0.39
CDX1P47902 CETN4P-206ENST00000642099 2168 ntBASIC12.6□□□□□ -0.39
CDX1P47902 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 MROH4P-201ENST00000431302 1578 ntBASIC12.6□□□□□ -0.39
CDX1P47902 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 AC091951.1-201ENST00000512854 2465 ntBASIC12.6□□□□□ -0.39
CDX1P47902 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC12.6□□□□□ -0.39
CDX1P47902 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC12.59□□□□□ -0.39
CDX1P47902 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC12.59□□□□□ -0.39
CDX1P47902 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
CDX1P47902 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC12.59□□□□□ -0.39
CDX1P47902 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 AC148477.4-201ENST00000613430 1793 ntBASIC12.59□□□□□ -0.39
CDX1P47902 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC12.59□□□□□ -0.39
CDX1P47902 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms