Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HNF4AP41235 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
HNF4AP41235 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HNF4AP41235 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
HNF4AP41235 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.9□□□□□ -0.02
HNF4AP41235 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HNF4AP41235 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC14.9□□□□□ -0.02
HNF4AP41235 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.9□□□□□ -0.02
HNF4AP41235 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.9□□□□□ -0.02
HNF4AP41235 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HNF4AP41235 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HNF4AP41235 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
HNF4AP41235 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HNF4AP41235 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC14.89□□□□□ -0.03
HNF4AP41235 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HNF4AP41235 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
HNF4AP41235 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
HNF4AP41235 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
HNF4AP41235 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
HNF4AP41235 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HNF4AP41235 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HNF4AP41235 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HNF4AP41235 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.89□□□□□ -0.03
HNF4AP41235 AC002472.2-201ENST00000442739 958 ntBASIC14.89□□□□□ -0.03
HNF4AP41235 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
HNF4AP41235 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HNF4AP41235 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC14.89□□□□□ -0.03
HNF4AP41235 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC14.89□□□□□ -0.03
HNF4AP41235 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.89□□□□□ -0.03
HNF4AP41235 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HNF4AP41235 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.89□□□□□ -0.03
HNF4AP41235 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC14.89□□□□□ -0.03
HNF4AP41235 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HNF4AP41235 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.89□□□□□ -0.03
HNF4AP41235 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.89□□□□□ -0.03
HNF4AP41235 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HNF4AP41235 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
HNF4AP41235 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HNF4AP41235 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HNF4AP41235 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
HNF4AP41235 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HNF4AP41235 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HNF4AP41235 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HNF4AP41235 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14.89□□□□□ -0.03
HNF4AP41235 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
HNF4AP41235 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HNF4AP41235 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HNF4AP41235 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
HNF4AP41235 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC14.89□□□□□ -0.03
HNF4AP41235 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HNF4AP41235 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HNF4AP41235 AC007541.1-201ENST00000570282 1469 ntBASIC14.89□□□□□ -0.03
HNF4AP41235 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HNF4AP41235 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
HNF4AP41235 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HNF4AP41235 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HNF4AP41235 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
HNF4AP41235 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
HNF4AP41235 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
HNF4AP41235 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14.88□□□□□ -0.03
HNF4AP41235 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
HNF4AP41235 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HNF4AP41235 OR2I1P-209ENST00000641730 5365 ntBASIC14.88□□□□□ -0.03
HNF4AP41235 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HNF4AP41235 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
HNF4AP41235 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HNF4AP41235 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.88□□□□□ -0.03
HNF4AP41235 SPTLC1P1-201ENST00000447199 261 ntBASIC14.88□□□□□ -0.03
HNF4AP41235 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.88□□□□□ -0.03
HNF4AP41235 RHOA-206ENST00000454011 889 ntTSL 2 BASIC14.88□□□□□ -0.03
HNF4AP41235 CD81-207ENST00000481687 890 ntTSL 2 BASIC14.88□□□□□ -0.03
HNF4AP41235 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC14.88□□□□□ -0.03
HNF4AP41235 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC14.88□□□□□ -0.03
HNF4AP41235 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC14.88□□□□□ -0.03
HNF4AP41235 AC092364.2-202ENST00000597012 1073 ntBASIC14.88□□□□□ -0.03
HNF4AP41235 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC14.88□□□□□ -0.03
HNF4AP41235 AL391069.4-201ENST00000609583 481 ntBASIC14.88□□□□□ -0.03
HNF4AP41235 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HNF4AP41235 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
HNF4AP41235 AC008761.3-201ENST00000624803 892 ntBASIC14.88□□□□□ -0.03
HNF4AP41235 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.88□□□□□ -0.03
HNF4AP41235 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
HNF4AP41235 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.88□□□□□ -0.03
HNF4AP41235 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HNF4AP41235 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
HNF4AP41235 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HNF4AP41235 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HNF4AP41235 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HNF4AP41235 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HNF4AP41235 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HNF4AP41235 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
HNF4AP41235 CLK3P2-201ENST00000427566 1453 ntBASIC14.88□□□□□ -0.03
HNF4AP41235 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HNF4AP41235 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
HNF4AP41235 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HNF4AP41235 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
HNF4AP41235 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HNF4AP41235 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms