Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CIITAP33076 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CIITAP33076 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
CIITAP33076 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC17.14■□□□□ 0.33
CIITAP33076 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC17.14■□□□□ 0.33
CIITAP33076 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.14■□□□□ 0.33
CIITAP33076 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CIITAP33076 AGAP7P-201ENST00000582299 2062 ntBASIC17.14■□□□□ 0.33
CIITAP33076 AGAP14-201ENST00000624701 2060 ntBASIC17.14■□□□□ 0.33
CIITAP33076 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CIITAP33076 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CIITAP33076 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CIITAP33076 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CIITAP33076 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
CIITAP33076 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.14■□□□□ 0.33
CIITAP33076 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC17.13■□□□□ 0.33
CIITAP33076 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CIITAP33076 ZEB1-AS1-208ENST00000607166 2503 ntBASIC17.13■□□□□ 0.33
CIITAP33076 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CIITAP33076 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CIITAP33076 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CIITAP33076 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CIITAP33076 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CIITAP33076 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CIITAP33076 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CIITAP33076 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CIITAP33076 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CIITAP33076 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CIITAP33076 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.13■□□□□ 0.33
CIITAP33076 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CIITAP33076 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CIITAP33076 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC17.13■□□□□ 0.33
CIITAP33076 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CIITAP33076 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CIITAP33076 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CIITAP33076 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC17.13■□□□□ 0.33
CIITAP33076 CSF2RBP1-201ENST00000447905 391 ntBASIC17.13■□□□□ 0.33
CIITAP33076 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC17.13■□□□□ 0.33
CIITAP33076 KRT223P-202ENST00000449164 1292 ntBASIC17.13■□□□□ 0.33
CIITAP33076 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC17.13■□□□□ 0.33
CIITAP33076 AHRR-211ENST00000515206 462 ntTSL 5 BASIC17.13■□□□□ 0.33
CIITAP33076 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CIITAP33076 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC17.13■□□□□ 0.33
CIITAP33076 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC17.13■□□□□ 0.33
CIITAP33076 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC17.13■□□□□ 0.33
CIITAP33076 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC17.13■□□□□ 0.33
CIITAP33076 AC138951.2-201ENST00000623455 1161 ntBASIC17.13■□□□□ 0.33
CIITAP33076 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC17.13■□□□□ 0.33
CIITAP33076 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CIITAP33076 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC17.13■□□□□ 0.33
CIITAP33076 CLUHP2-201ENST00000426660 1303 ntBASIC17.13■□□□□ 0.33
CIITAP33076 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CIITAP33076 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CIITAP33076 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CIITAP33076 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CIITAP33076 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CIITAP33076 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
CIITAP33076 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CIITAP33076 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CIITAP33076 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CIITAP33076 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC17.12■□□□□ 0.33
CIITAP33076 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CIITAP33076 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
CIITAP33076 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CIITAP33076 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CIITAP33076 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CIITAP33076 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CIITAP33076 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CIITAP33076 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CIITAP33076 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CIITAP33076 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CIITAP33076 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CIITAP33076 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CIITAP33076 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
CIITAP33076 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CIITAP33076 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC17.12■□□□□ 0.33
CIITAP33076 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CIITAP33076 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CIITAP33076 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC17.12■□□□□ 0.33
CIITAP33076 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC17.12■□□□□ 0.33
CIITAP33076 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC17.12■□□□□ 0.33
CIITAP33076 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC17.12■□□□□ 0.33
CIITAP33076 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC17.12■□□□□ 0.33
CIITAP33076 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC17.12■□□□□ 0.33
CIITAP33076 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC17.12■□□□□ 0.33
CIITAP33076 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CIITAP33076 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CIITAP33076 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CIITAP33076 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CIITAP33076 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CIITAP33076 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC17.12■□□□□ 0.33
CIITAP33076 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CIITAP33076 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CIITAP33076 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC17.12■□□□□ 0.33
CIITAP33076 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CIITAP33076 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC17.12■□□□□ 0.33
CIITAP33076 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CIITAP33076 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
CIITAP33076 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CIITAP33076 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms