Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
COL5A3P25940 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC18.66■□□□□ 0.58
COL5A3P25940 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC18.66■□□□□ 0.58
COL5A3P25940 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
COL5A3P25940 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL5A3P25940 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC18.66■□□□□ 0.58
COL5A3P25940 MVK-217ENST00000639206 367 ntTSL 5 BASIC18.66■□□□□ 0.58
COL5A3P25940 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL5A3P25940 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL5A3P25940 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC18.66■□□□□ 0.58
COL5A3P25940 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC18.66■□□□□ 0.58
COL5A3P25940 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL5A3P25940 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC18.66■□□□□ 0.58
COL5A3P25940 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC18.66■□□□□ 0.58
COL5A3P25940 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL5A3P25940 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC18.66■□□□□ 0.58
COL5A3P25940 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL5A3P25940 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL5A3P25940 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.66■□□□□ 0.58
COL5A3P25940 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.66■□□□□ 0.58
COL5A3P25940 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC18.66■□□□□ 0.58
COL5A3P25940 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL5A3P25940 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL5A3P25940 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL5A3P25940 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC18.66■□□□□ 0.58
COL5A3P25940 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC18.66■□□□□ 0.58
COL5A3P25940 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL5A3P25940 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL5A3P25940 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC18.66■□□□□ 0.58
COL5A3P25940 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
COL5A3P25940 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
COL5A3P25940 AC092580.1-201ENST00000433998 658 ntBASIC18.66■□□□□ 0.58
COL5A3P25940 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL5A3P25940 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC18.66■□□□□ 0.58
COL5A3P25940 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC18.66■□□□□ 0.58
COL5A3P25940 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC18.66■□□□□ 0.58
COL5A3P25940 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC18.66■□□□□ 0.58
COL5A3P25940 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC18.66■□□□□ 0.58
COL5A3P25940 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A3P25940 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A3P25940 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A3P25940 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A3P25940 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A3P25940 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
COL5A3P25940 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
COL5A3P25940 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC18.65■□□□□ 0.58
COL5A3P25940 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
COL5A3P25940 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A3P25940 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC18.65■□□□□ 0.58
COL5A3P25940 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC18.65■□□□□ 0.58
COL5A3P25940 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A3P25940 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A3P25940 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A3P25940 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A3P25940 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A3P25940 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC18.65■□□□□ 0.58
COL5A3P25940 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC18.65■□□□□ 0.58
COL5A3P25940 AC004837.1-201ENST00000446267 564 ntBASIC18.65■□□□□ 0.58
COL5A3P25940 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC18.65■□□□□ 0.58
COL5A3P25940 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC18.65■□□□□ 0.58
COL5A3P25940 CD164-210ENST00000512821 964 ntTSL 2 BASIC18.65■□□□□ 0.58
COL5A3P25940 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC18.65■□□□□ 0.58
COL5A3P25940 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A3P25940 AL022344.2-201ENST00000568976 968 ntBASIC18.65■□□□□ 0.58
COL5A3P25940 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC18.65■□□□□ 0.58
COL5A3P25940 AC009560.1-201ENST00000620208 434 ntBASIC18.65■□□□□ 0.58
COL5A3P25940 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL5A3P25940 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A3P25940 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.65■□□□□ 0.58
COL5A3P25940 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL5A3P25940 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A3P25940 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
COL5A3P25940 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
COL5A3P25940 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
COL5A3P25940 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL5A3P25940 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC18.64■□□□□ 0.58
COL5A3P25940 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC18.64■□□□□ 0.58
COL5A3P25940 HLA-DQB1-202ENST00000399079 1501 ntBASIC18.64■□□□□ 0.58
COL5A3P25940 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL5A3P25940 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A3P25940 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A3P25940 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A3P25940 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A3P25940 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A3P25940 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC18.64■□□□□ 0.57
COL5A3P25940 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
COL5A3P25940 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC18.64■□□□□ 0.57
COL5A3P25940 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A3P25940 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A3P25940 RHEB-207ENST00000496004 744 ntTSL 2 BASIC18.64■□□□□ 0.57
COL5A3P25940 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC18.64■□□□□ 0.57
COL5A3P25940 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A3P25940 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A3P25940 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A3P25940 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A3P25940 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A3P25940 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A3P25940 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A3P25940 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A3P25940 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 94.3 ms