Protein–RNA interactions for Protein: O95749

GGPS1, Geranylgeranyl pyrophosphate synthase, humanhuman

Predictions only

Length 300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GGPS1O95749 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 AC055811.4-201ENST00000624039 1754 ntBASIC17.1■□□□□ 0.33
GGPS1O95749 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 WARS-232ENST00000556645 2508 ntTSL 5 BASIC17.1■□□□□ 0.33
GGPS1O95749 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
GGPS1O95749 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 AC006033.1-201ENST00000440505 426 ntBASIC17.1■□□□□ 0.33
GGPS1O95749 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC17.1■□□□□ 0.33
GGPS1O95749 AL591846.1-201ENST00000451736 433 ntBASIC17.1■□□□□ 0.33
GGPS1O95749 AC104306.2-201ENST00000451877 341 ntBASIC17.1■□□□□ 0.33
GGPS1O95749 RPSAP36-202ENST00000494591 1261 ntBASIC17.1■□□□□ 0.33
GGPS1O95749 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
GGPS1O95749 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
GGPS1O95749 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC17.1■□□□□ 0.33
GGPS1O95749 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
GGPS1O95749 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC17.1■□□□□ 0.33
GGPS1O95749 AC005695.3-201ENST00000614522 232 ntBASIC17.1■□□□□ 0.33
GGPS1O95749 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC17.1■□□□□ 0.33
GGPS1O95749 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC17.1■□□□□ 0.33
GGPS1O95749 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
GGPS1O95749 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
GGPS1O95749 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
GGPS1O95749 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
GGPS1O95749 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
GGPS1O95749 AL157414.3-201ENST00000624276 1954 ntBASIC17.09■□□□□ 0.33
GGPS1O95749 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
GGPS1O95749 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC17.09■□□□□ 0.33
GGPS1O95749 MST1L-201ENST00000442552 2185 ntBASIC17.09■□□□□ 0.33
GGPS1O95749 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC17.09■□□□□ 0.33
GGPS1O95749 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
GGPS1O95749 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC17.09■□□□□ 0.33
GGPS1O95749 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
GGPS1O95749 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.09■□□□□ 0.33
GGPS1O95749 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
GGPS1O95749 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC17.09■□□□□ 0.33
GGPS1O95749 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
GGPS1O95749 RPS3-201ENST00000278572 907 ntTSL 3 BASIC17.09■□□□□ 0.33
GGPS1O95749 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
GGPS1O95749 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
GGPS1O95749 NME6-203ENST00000415644 849 ntTSL 2 BASIC17.09■□□□□ 0.33
GGPS1O95749 GPAA1P2-201ENST00000417923 928 ntBASIC17.09■□□□□ 0.33
GGPS1O95749 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC17.09■□□□□ 0.33
GGPS1O95749 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC17.09■□□□□ 0.33
GGPS1O95749 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
GGPS1O95749 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC17.09■□□□□ 0.33
GGPS1O95749 COX5BP1-201ENST00000507622 393 ntBASIC17.09■□□□□ 0.33
GGPS1O95749 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
GGPS1O95749 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC17.09■□□□□ 0.33
GGPS1O95749 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC17.09■□□□□ 0.33
GGPS1O95749 MIR3615-201ENST00000581999 87 ntBASIC17.09■□□□□ 0.33
GGPS1O95749 OR10B1P-201ENST00000601666 907 ntBASIC17.09■□□□□ 0.33
GGPS1O95749 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
GGPS1O95749 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
GGPS1O95749 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC17.09■□□□□ 0.33
GGPS1O95749 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
GGPS1O95749 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
GGPS1O95749 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
GGPS1O95749 ANKRD30BP2-201ENST00000435744 1610 ntBASIC17.09■□□□□ 0.33
GGPS1O95749 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
GGPS1O95749 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC17.09■□□□□ 0.33
GGPS1O95749 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
GGPS1O95749 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
GGPS1O95749 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
GGPS1O95749 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
GGPS1O95749 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
GGPS1O95749 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC17.09■□□□□ 0.33
GGPS1O95749 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
GGPS1O95749 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
GGPS1O95749 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
GGPS1O95749 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
GGPS1O95749 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC17.08■□□□□ 0.33
GGPS1O95749 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.08■□□□□ 0.33
GGPS1O95749 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC17.08■□□□□ 0.33
GGPS1O95749 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC17.08■□□□□ 0.33
GGPS1O95749 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
GGPS1O95749 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.33
GGPS1O95749 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
GGPS1O95749 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
GGPS1O95749 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
GGPS1O95749 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
GGPS1O95749 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC17.08■□□□□ 0.32
GGPS1O95749 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms