Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM49D1C9J1S8 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 BANP-203ENST00000393207 2438 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 STOM-202ENST00000347359 870 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 MIR4453-201ENST00000584019 89 ntBASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 AC025048.3-201ENST00000590609 569 ntBASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 AC005702.4-201ENST00000618393 416 ntBASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 LINC00628-201ENST00000628516 1289 ntBASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 TKT-201ENST00000296289 1931 ntTSL 5 BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 AC138969.3-201ENST00000546612 1459 ntBASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 AC138932.2-201ENST00000548268 1459 ntBASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 AC126755.4-201ENST00000549796 1459 ntBASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
TRIM49D1C9J1S8 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 AC005829.1-201ENST00000570002 483 ntBASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 AL589739.1-201ENST00000607720 493 ntBASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
TRIM49D1C9J1S8 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms