Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 PPT1-215ENST00000641471 2368 ntBASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 Z93015.1-201ENST00000451718 390 ntBASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF3Q9HD45 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 KRT8P13-201ENST00000463294 1010 ntBASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 TPI1-206ENST00000488464 791 ntTSL 5 BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 RNA5SP486-201ENST00000515961 83 ntBASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 HNRNPA1P48-202ENST00000565308 961 ntBASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 TBCB-211ENST00000589996 724 ntTSL 3 BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 GPR39-203ENST00000622084 900 ntTSL 5 BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 NORAD-201ENST00000565493 5339 ntBASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
TM9SF3Q9HD45 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
TM9SF3Q9HD45 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TM9SF3Q9HD45 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TM9SF3Q9HD45 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TM9SF3Q9HD45 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TM9SF3Q9HD45 TCAF2P1-201ENST00000291129 2421 ntBASIC15.3■□□□□ 0.04
TM9SF3Q9HD45 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.3■□□□□ 0.04
TM9SF3Q9HD45 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TM9SF3Q9HD45 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
TM9SF3Q9HD45 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TM9SF3Q9HD45 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TM9SF3Q9HD45 MIR1202-201ENST00000408529 83 ntBASIC15.3■□□□□ 0.04
TM9SF3Q9HD45 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms