Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 AP001582.1-201ENST00000525856 295 ntBASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 METTL26-214ENST00000614890 801 ntTSL 3 BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 RPSAP52-203ENST00000622976 1023 ntBASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 BX539320.1-201ENST00000623759 877 ntBASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.23■□□□□ 0.03
TRIM39Q9HCM9 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 BRF1-202ENST00000379932 884 ntTSL 5 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 NUS1P3-201ENST00000423502 862 ntBASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 AC093433.1-201ENST00000458048 571 ntBASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.22■□□□□ 0.03
TRIM39Q9HCM9 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms