Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL21A1Q96P44 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.54□□□□□ -0.08
COL21A1Q96P44 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL21A1Q96P44 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL21A1Q96P44 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL21A1Q96P44 AC007686.3-201ENST00000619017 3487 ntBASIC14.54□□□□□ -0.08
COL21A1Q96P44 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
COL21A1Q96P44 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL21A1Q96P44 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL21A1Q96P44 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL21A1Q96P44 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL21A1Q96P44 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL21A1Q96P44 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL21A1Q96P44 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
COL21A1Q96P44 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.54□□□□□ -0.08
COL21A1Q96P44 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.54□□□□□ -0.08
COL21A1Q96P44 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.54□□□□□ -0.08
COL21A1Q96P44 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.54□□□□□ -0.08
COL21A1Q96P44 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL21A1Q96P44 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.54□□□□□ -0.08
COL21A1Q96P44 TIMM17BP1-201ENST00000545713 516 ntBASIC14.54□□□□□ -0.08
COL21A1Q96P44 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
COL21A1Q96P44 AC004461.2-201ENST00000629517 803 ntBASIC14.54□□□□□ -0.08
COL21A1Q96P44 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
COL21A1Q96P44 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL21A1Q96P44 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.54□□□□□ -0.08
COL21A1Q96P44 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.54□□□□□ -0.08
COL21A1Q96P44 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.54□□□□□ -0.08
COL21A1Q96P44 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.54□□□□□ -0.08
COL21A1Q96P44 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL21A1Q96P44 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
COL21A1Q96P44 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL21A1Q96P44 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL21A1Q96P44 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.54□□□□□ -0.08
COL21A1Q96P44 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.54□□□□□ -0.08
COL21A1Q96P44 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.54□□□□□ -0.08
COL21A1Q96P44 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
COL21A1Q96P44 AC104581.4-201ENST00000623126 3052 ntBASIC14.54□□□□□ -0.08
COL21A1Q96P44 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL21A1Q96P44 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL21A1Q96P44 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
COL21A1Q96P44 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
COL21A1Q96P44 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.08
COL21A1Q96P44 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
COL21A1Q96P44 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
COL21A1Q96P44 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC14.53□□□□□ -0.08
COL21A1Q96P44 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
COL21A1Q96P44 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 AC084364.1-201ENST00000551967 1556 ntBASIC14.53□□□□□ -0.08
COL21A1Q96P44 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
COL21A1Q96P44 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
COL21A1Q96P44 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.53□□□□□ -0.08
COL21A1Q96P44 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.53□□□□□ -0.08
COL21A1Q96P44 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 RPL5P21-201ENST00000404620 815 ntBASIC14.53□□□□□ -0.08
COL21A1Q96P44 AC074338.1-201ENST00000416825 156 ntBASIC14.53□□□□□ -0.08
COL21A1Q96P44 FAM8A3P-201ENST00000427218 844 ntBASIC14.53□□□□□ -0.08
COL21A1Q96P44 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.53□□□□□ -0.08
COL21A1Q96P44 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.53□□□□□ -0.08
COL21A1Q96P44 UGT1A2P-201ENST00000454886 866 ntBASIC14.53□□□□□ -0.08
COL21A1Q96P44 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 SLED1-202ENST00000512051 380 ntBASIC14.53□□□□□ -0.08
COL21A1Q96P44 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.53□□□□□ -0.08
COL21A1Q96P44 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.53□□□□□ -0.08
COL21A1Q96P44 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.53□□□□□ -0.08
COL21A1Q96P44 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.53□□□□□ -0.08
COL21A1Q96P44 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC14.53□□□□□ -0.08
COL21A1Q96P44 AC004840.1-201ENST00000636359 365 ntBASIC14.53□□□□□ -0.08
COL21A1Q96P44 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC14.53□□□□□ -0.08
COL21A1Q96P44 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC14.53□□□□□ -0.08
COL21A1Q96P44 COCH-203ENST00000460581 2688 ntTSL 2 BASIC14.53□□□□□ -0.08
COL21A1Q96P44 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.53□□□□□ -0.08
COL21A1Q96P44 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
COL21A1Q96P44 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL21A1Q96P44 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
COL21A1Q96P44 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms