Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC17.45■□□□□ 0.38
ATL3Q6DD88 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ATL3Q6DD88 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
ATL3Q6DD88 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ATL3Q6DD88 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC17.45■□□□□ 0.38
ATL3Q6DD88 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.45■□□□□ 0.38
ATL3Q6DD88 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC17.45■□□□□ 0.38
ATL3Q6DD88 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.45■□□□□ 0.38
ATL3Q6DD88 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.45■□□□□ 0.38
ATL3Q6DD88 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC17.45■□□□□ 0.38
ATL3Q6DD88 AC004449.1-201ENST00000564240 433 ntBASIC17.45■□□□□ 0.38
ATL3Q6DD88 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC17.45■□□□□ 0.38
ATL3Q6DD88 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ATL3Q6DD88 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.45■□□□□ 0.38
ATL3Q6DD88 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
ATL3Q6DD88 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC17.45■□□□□ 0.38
ATL3Q6DD88 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ATL3Q6DD88 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ATL3Q6DD88 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ATL3Q6DD88 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC17.45■□□□□ 0.38
ATL3Q6DD88 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
ATL3Q6DD88 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
ATL3Q6DD88 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ATL3Q6DD88 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
ATL3Q6DD88 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC17.45■□□□□ 0.38
ATL3Q6DD88 AC055811.4-201ENST00000624039 1754 ntBASIC17.45■□□□□ 0.38
ATL3Q6DD88 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC17.45■□□□□ 0.38
ATL3Q6DD88 DRD5P1-201ENST00000456605 1438 ntBASIC17.45■□□□□ 0.38
ATL3Q6DD88 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ATL3Q6DD88 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATL3Q6DD88 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATL3Q6DD88 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ATL3Q6DD88 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC17.44■□□□□ 0.38
ATL3Q6DD88 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ATL3Q6DD88 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
ATL3Q6DD88 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
ATL3Q6DD88 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC17.44■□□□□ 0.38
ATL3Q6DD88 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATL3Q6DD88 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATL3Q6DD88 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATL3Q6DD88 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ATL3Q6DD88 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ATL3Q6DD88 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ATL3Q6DD88 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.44■□□□□ 0.38
ATL3Q6DD88 TSSK5P-201ENST00000423978 907 ntBASIC17.44■□□□□ 0.38
ATL3Q6DD88 HLA-K-203ENST00000430151 1046 ntBASIC17.44■□□□□ 0.38
ATL3Q6DD88 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.44■□□□□ 0.38
ATL3Q6DD88 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC17.44■□□□□ 0.38
ATL3Q6DD88 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.44■□□□□ 0.38
ATL3Q6DD88 AC026410.3-201ENST00000514280 936 ntBASIC17.44■□□□□ 0.38
ATL3Q6DD88 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC17.44■□□□□ 0.38
ATL3Q6DD88 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATL3Q6DD88 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC17.44■□□□□ 0.38
ATL3Q6DD88 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC17.44■□□□□ 0.38
ATL3Q6DD88 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC17.44■□□□□ 0.38
ATL3Q6DD88 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC17.44■□□□□ 0.38
ATL3Q6DD88 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
ATL3Q6DD88 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC17.44■□□□□ 0.38
ATL3Q6DD88 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ATL3Q6DD88 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
ATL3Q6DD88 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC17.44■□□□□ 0.38
ATL3Q6DD88 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATL3Q6DD88 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
ATL3Q6DD88 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATL3Q6DD88 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ATL3Q6DD88 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
ATL3Q6DD88 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ATL3Q6DD88 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC17.44■□□□□ 0.38
ATL3Q6DD88 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATL3Q6DD88 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC17.43■□□□□ 0.38
ATL3Q6DD88 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC17.43■□□□□ 0.38
ATL3Q6DD88 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATL3Q6DD88 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATL3Q6DD88 MYO15B-237ENST00000642007 4893 ntBASIC17.43■□□□□ 0.38
ATL3Q6DD88 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATL3Q6DD88 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATL3Q6DD88 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC17.43■□□□□ 0.38
ATL3Q6DD88 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC17.43■□□□□ 0.38
ATL3Q6DD88 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATL3Q6DD88 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
ATL3Q6DD88 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATL3Q6DD88 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC17.43■□□□□ 0.38
ATL3Q6DD88 AP001267.2-201ENST00000532619 2086 ntBASIC17.43■□□□□ 0.38
ATL3Q6DD88 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
ATL3Q6DD88 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATL3Q6DD88 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATL3Q6DD88 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATL3Q6DD88 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATL3Q6DD88 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATL3Q6DD88 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATL3Q6DD88 AL157414.3-201ENST00000624276 1954 ntBASIC17.43■□□□□ 0.38
ATL3Q6DD88 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ATL3Q6DD88 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC17.43■□□□□ 0.38
ATL3Q6DD88 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
ATL3Q6DD88 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC17.43■□□□□ 0.38
ATL3Q6DD88 NUS1P3-201ENST00000423502 862 ntBASIC17.43■□□□□ 0.38
ATL3Q6DD88 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC17.43■□□□□ 0.38
ATL3Q6DD88 AC241585.1-201ENST00000433527 519 ntBASIC17.43■□□□□ 0.38
ATL3Q6DD88 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC17.43■□□□□ 0.38
ATL3Q6DD88 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms