Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
VPS13DQ5THJ4 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC9.97□□□□□ -0.81
VPS13DQ5THJ4 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
VPS13DQ5THJ4 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
VPS13DQ5THJ4 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC9.97□□□□□ -0.81
VPS13DQ5THJ4 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC9.97□□□□□ -0.81
VPS13DQ5THJ4 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC9.97□□□□□ -0.81
VPS13DQ5THJ4 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC9.97□□□□□ -0.81
VPS13DQ5THJ4 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC9.97□□□□□ -0.81
VPS13DQ5THJ4 AC138466.4-201ENST00000623965 852 ntBASIC9.97□□□□□ -0.81
VPS13DQ5THJ4 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC9.97□□□□□ -0.81
VPS13DQ5THJ4 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC9.97□□□□□ -0.81
VPS13DQ5THJ4 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
VPS13DQ5THJ4 PCDHGB8P-201ENST00000502926 1973 ntBASIC9.97□□□□□ -0.81
VPS13DQ5THJ4 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 BANF1P3-201ENST00000412556 261 ntBASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 AC100827.2-201ENST00000563214 1194 ntBASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 MT3-203ENST00000565838 421 ntTSL 3 BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 MX1-218ENST00000619682 1980 ntTSL 5 BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 KRT18P9-201ENST00000604826 1300 ntBASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 AC103810.10-201ENST00000606504 343 ntBASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC9.96□□□□□ -0.81
VPS13DQ5THJ4 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 R3HDM2P2-201ENST00000401880 2116 ntBASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 VPS18-202ENST00000558474 873 ntTSL 3 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 AC068867.1-201ENST00000559855 150 ntBASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 MIR6769A-201ENST00000617340 73 ntBASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 AP001184.1-201ENST00000637936 376 ntBASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 FTX-216ENST00000638985 1367 ntTSL 5 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 AP002353.1-201ENST00000528257 1599 ntBASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 RNA5SP359-201ENST00000364838 113 ntBASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 DDX39AP1-201ENST00000445147 1181 ntBASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 DUTP3-201ENST00000450025 415 ntBASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
VPS13DQ5THJ4 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms