Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
LHX1P48742 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.14■□□□□ 0.17
LHX1P48742 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LHX1P48742 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.14■□□□□ 0.17
LHX1P48742 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LHX1P48742 AL137783.1-201ENST00000623494 1896 ntBASIC16.14■□□□□ 0.17
LHX1P48742 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LHX1P48742 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.14■□□□□ 0.17
LHX1P48742 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.14■□□□□ 0.17
LHX1P48742 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
LHX1P48742 CICP6-201ENST00000457191 2729 ntBASIC16.14■□□□□ 0.17
LHX1P48742 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC16.14■□□□□ 0.17
LHX1P48742 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LHX1P48742 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LHX1P48742 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
LHX1P48742 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC16.14■□□□□ 0.17
LHX1P48742 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LHX1P48742 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC16.14■□□□□ 0.17
LHX1P48742 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LHX1P48742 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC16.14■□□□□ 0.17
LHX1P48742 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LHX1P48742 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC16.14■□□□□ 0.17
LHX1P48742 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC16.14■□□□□ 0.17
LHX1P48742 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
LHX1P48742 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LHX1P48742 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC16.14■□□□□ 0.17
LHX1P48742 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
LHX1P48742 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LHX1P48742 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC16.14■□□□□ 0.17
LHX1P48742 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC16.14■□□□□ 0.17
LHX1P48742 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC16.14■□□□□ 0.17
LHX1P48742 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC16.14■□□□□ 0.17
LHX1P48742 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LHX1P48742 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
LHX1P48742 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC16.14■□□□□ 0.17
LHX1P48742 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC16.14■□□□□ 0.17
LHX1P48742 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC16.14■□□□□ 0.17
LHX1P48742 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC16.14■□□□□ 0.17
LHX1P48742 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC16.14■□□□□ 0.17
LHX1P48742 ECM1P1-201ENST00000604092 1279 ntBASIC16.14■□□□□ 0.17
LHX1P48742 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC16.14■□□□□ 0.17
LHX1P48742 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC16.14■□□□□ 0.17
LHX1P48742 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
LHX1P48742 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.14■□□□□ 0.17
LHX1P48742 AL359258.3-201ENST00000622910 2331 ntBASIC16.14■□□□□ 0.17
LHX1P48742 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.14■□□□□ 0.17
LHX1P48742 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
LHX1P48742 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LHX1P48742 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LHX1P48742 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LHX1P48742 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC16.14■□□□□ 0.17
LHX1P48742 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.14■□□□□ 0.17
LHX1P48742 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
LHX1P48742 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
LHX1P48742 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC16.14■□□□□ 0.17
LHX1P48742 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LHX1P48742 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
LHX1P48742 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC16.14■□□□□ 0.17
LHX1P48742 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LHX1P48742 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.14■□□□□ 0.17
LHX1P48742 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC16.14■□□□□ 0.17
LHX1P48742 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
LHX1P48742 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
LHX1P48742 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.14■□□□□ 0.17
LHX1P48742 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.13■□□□□ 0.17
LHX1P48742 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
LHX1P48742 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
LHX1P48742 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LHX1P48742 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LHX1P48742 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LHX1P48742 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LHX1P48742 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LHX1P48742 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LHX1P48742 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
LHX1P48742 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
LHX1P48742 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LHX1P48742 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
LHX1P48742 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LHX1P48742 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LHX1P48742 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
LHX1P48742 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LHX1P48742 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.13■□□□□ 0.17
LHX1P48742 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
LHX1P48742 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LHX1P48742 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC16.13■□□□□ 0.17
LHX1P48742 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LHX1P48742 TPO-206ENST00000382269 1155 ntTSL 5 BASIC16.13■□□□□ 0.17
LHX1P48742 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
LHX1P48742 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
LHX1P48742 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LHX1P48742 POM121L8P-201ENST00000417732 1281 ntBASIC16.13■□□□□ 0.17
LHX1P48742 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LHX1P48742 POM121L9P-203ENST00000441984 1285 ntBASIC16.13■□□□□ 0.17
LHX1P48742 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC16.13■□□□□ 0.17
LHX1P48742 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LHX1P48742 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
LHX1P48742 DUX4L45-201ENST00000566406 1057 ntBASIC16.13■□□□□ 0.17
LHX1P48742 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
LHX1P48742 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC16.13■□□□□ 0.17
LHX1P48742 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms