Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MSX2P35548 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
MSX2P35548 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX2P35548 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX2P35548 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX2P35548 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC14.68□□□□□ -0.06
MSX2P35548 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC14.68□□□□□ -0.06
MSX2P35548 AC142381.1-201ENST00000426099 345 ntBASIC14.68□□□□□ -0.06
MSX2P35548 KRT18P2-201ENST00000447938 1258 ntBASIC14.68□□□□□ -0.06
MSX2P35548 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC14.68□□□□□ -0.06
MSX2P35548 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC14.68□□□□□ -0.06
MSX2P35548 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
MSX2P35548 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC14.68□□□□□ -0.06
MSX2P35548 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC14.68□□□□□ -0.06
MSX2P35548 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX2P35548 AP002472.1-201ENST00000577490 586 ntBASIC14.68□□□□□ -0.06
MSX2P35548 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC14.68□□□□□ -0.06
MSX2P35548 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX2P35548 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
MSX2P35548 PRKN-208ENST00000610470 531 ntTSL 2 BASIC14.68□□□□□ -0.06
MSX2P35548 PRKN-209ENST00000612485 225 ntTSL 5 BASIC14.68□□□□□ -0.06
MSX2P35548 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX2P35548 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC14.68□□□□□ -0.06
MSX2P35548 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX2P35548 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
MSX2P35548 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
MSX2P35548 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX2P35548 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX2P35548 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
MSX2P35548 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
MSX2P35548 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX2P35548 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX2P35548 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MSX2P35548 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MSX2P35548 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
MSX2P35548 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
MSX2P35548 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
MSX2P35548 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX2P35548 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX2P35548 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
MSX2P35548 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
MSX2P35548 DGCR9-201ENST00000609630 2415 ntBASIC14.67□□□□□ -0.06
MSX2P35548 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
MSX2P35548 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
MSX2P35548 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
MSX2P35548 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX2P35548 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC14.67□□□□□ -0.06
MSX2P35548 AC011474.4-201ENST00000623523 2076 ntBASIC14.67□□□□□ -0.06
MSX2P35548 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX2P35548 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
MSX2P35548 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX2P35548 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC14.67□□□□□ -0.06
MSX2P35548 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
MSX2P35548 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX2P35548 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX2P35548 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
MSX2P35548 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX2P35548 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX2P35548 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC14.67□□□□□ -0.06
MSX2P35548 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
MSX2P35548 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
MSX2P35548 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
MSX2P35548 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
MSX2P35548 KLK8-202ENST00000320838 456 ntTSL 5 BASIC14.67□□□□□ -0.06
MSX2P35548 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX2P35548 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC14.67□□□□□ -0.06
MSX2P35548 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC14.67□□□□□ -0.06
MSX2P35548 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX2P35548 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
MSX2P35548 AC079781.3-201ENST00000449110 356 ntBASIC14.67□□□□□ -0.06
MSX2P35548 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC14.67□□□□□ -0.06
MSX2P35548 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
MSX2P35548 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC14.67□□□□□ -0.06
MSX2P35548 AC011467.4-201ENST00000594891 528 ntBASIC14.67□□□□□ -0.06
MSX2P35548 AC068137.2-201ENST00000605408 478 ntBASIC14.67□□□□□ -0.06
MSX2P35548 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC14.67□□□□□ -0.06
MSX2P35548 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC14.67□□□□□ -0.06
MSX2P35548 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
MSX2P35548 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
MSX2P35548 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
MSX2P35548 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.67□□□□□ -0.06
MSX2P35548 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
MSX2P35548 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.67□□□□□ -0.06
MSX2P35548 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
MSX2P35548 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.67□□□□□ -0.06
MSX2P35548 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX2P35548 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX2P35548 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC14.67□□□□□ -0.06
MSX2P35548 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX2P35548 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX2P35548 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX2P35548 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
MSX2P35548 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX2P35548 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX2P35548 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.67□□□□□ -0.06
MSX2P35548 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
MSX2P35548 REM2-202ENST00000536884 1331 ntTSL 2 BASIC14.66□□□□□ -0.06
MSX2P35548 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
MSX2P35548 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC14.66□□□□□ -0.06
MSX2P35548 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms